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The map label for this gene is sciC

Identifier: 119900190

GI number: 119900190

Start: 4277775

End: 4279646

Strand: Direct

Name: sciC

Synonym: azo3901

Alternate gene names: NA

Gene position: 4277775-4279646 (Clockwise)

Preceding gene: 119900189

Following gene: 119900191

Centisome position: 97.75

GC content: 69.6

Gene sequence:

>1872_bases
ATGGATCCCCGGCTGCTGCGCTACTACAACCTCGAACTCCAGCACCTGCGCGAGATGGGCGCGGAGTTCGCGCGCCAGTT
TCCCAAGATCGCCGCGCGCCTCGGCATGGACGGCATCGAGGTCGCCGACCCCTATGTCGAGCGCCTGCTCGAAGGCGCGG
GTTTCCTGGCCGCGCGCGTGCAGCTCAAGCTCGACGCCGAATTCCCCCGCTTCACCCAGCGCCTGCTGGAGATGCTGCAC
CCGCACTACCTCGCGCCCACGCCGGCGATGCTGGTGGCGCAGTTCCGCCCGGTGCCGGGCGAGACCAACCTTGCGCGCGG
CTTCACGCTGCCGCGCGGCACGCCGTTCCGCAGCCCGCTCGGCAAGGGCGACGCCGCCGCGTGCGAATTCCGCACCGCGC
ACGAGATCCGGCTGTGGCCGCTGGAGTTGGTGCAGGCGCGCTACTTCAGCTTTGCCGCCGATCTTCCGCTGGCCCGCCTG
CCGCTCGCGGGGCGGGTACGCGGTGGGGTGCGGCTGACGCTGCGCACCACCGGCGGACTCAAGTTCAGCCAGCTCTCGCT
CGACACGCTGAACCTGCACCTCGGCGGCGCGCAGGAAGTGGCCTACCGGCTGTGCGAGCTGATCGGCGCGGCCTCGCTCG
GCGCGCTGGTGCAGCCCGCGGGCGGCAAGGGCGGCTGGCAGCGCTTCATCCCGTCGGAGCAGATCCGCCTGACCGGCTAC
GACGACGATCAGGCCCTGCTGCCCACTGCGCACCGCAGCTTCGGCGGCTACCGGCTGGTACAGGAGTACTTCTCCTTCCC
CGAACGCTTCCTGTTCTTCGACGTTGGCGGGCTGGCCCCCGCGCTGGCCCAGGCCGACGACGAGATCGAACTGGTGCTGC
TGTTCGGCCAGGGCGACGCGGTGCTCGAAAGCGTGGTGGACAACGCCAACTTCCTGCTCCACTGCACGCCGGCAATCAAC
CTGTTTCCGAAGCGCACCGACCGCATCCACGTCAACGACAGCGGCAACGAGTTCCACGTCGTCGCCGACCGCACGCGGCC
GATGGACTACGAAATCTACGAGCTGACCGAAGTGCTCGGTCACTTCCACGGCTCGCGCGACGAACAGCGCTTCCTGCCGT
TCTACGCCGACTTCCATTCCGGCACCGGGGACAGCCAGGCCTACTACAGCTGCCGGCGCGAACCGCGGCTGCTGTCGGAA
AAGCAGAAGAAGAACGGCCCGCGCACCGGCTATGTGGGCAGCGAAGTCTTCCTGTCGCTGGTCGACCCGCGCGAGGCGCC
CTACCGCGCCGACCTGCGCCAGCTGTCGATCCAGGCGCTGTGCACCAACCGCGACCTGCCCATCCTGCTGCCACAGGGTG
GTGGCCAGACCGACTTCTCGCTCGACATCGCCGCGCCGGTCGAGGCGATCCGCTGCGTGCGCGGCCCCTCGCGGCCCTAC
GGCATGCTGGCCGAAGGCGCCAGCGCATGGCGCCTGATCAGCCACCTGGCGCTCAACCACTTCTCGCTGGTGGATGCCGA
CGCGCACGAAGGCGCCGGCGCGCTGCGCGAAATGCTCGAACTCTACGCAACCAGCGCCGACGTCGGCATGCGGCGCCAGG
TGGAAGGGCTGAAGTCGGTCCGCGTGCTTCCCGTCGTCGCCCGCCTGCCCTTCCCCGGGCCGATCTGCTTCGGGCGCGGG
CTGGAGATCGCGCTGGAAGTGGACGAGACCGCGTTCGAGGGCGGCGGCGCCTTCGTGTTCGGCTCGGTCATGGAGCATTT
CCTCGCCCGCCACGCCTCGCTCAACAGCTTCACCCAGACCACGCTGCGCTCGCTCACGCGCGGGGTGGTCATGCGCTGGG
AGCCGCGATGCGGCAAGCGCACGATCCTGTAA

Upstream 100 bases:

>100_bases
GAACACATGAAGCATCCCCTCCACGCACTGCGCATGACGCGCGCCGGCGGTGCCCGGCCGGCCCCCACGGCAACCACGGG
ACGGGCGGACACGTACTGAC

Downstream 100 bases:

>100_bases
GCCTGTTCGACGCCCTGGCGCGCGAGCCCTGGGCCTTCGACTTCCTGCAGGCGATGCGCCGCATCGAATGCGCCTTTCCC
GAGCGGCCGCGCTGGGGCAG

Product: putative cytoplasmic protein SciC

Products: NA

Alternate protein names: Type VI Secretion Protein Family; T6ss C; Type VI Secretion System; Type VI Secretion System Protein EvpF; Type VI Secretion System Protein; Type VI Secretion Protein VasA; Type VI Secretion; Type VI Secretion System Core Protein; Protein ImpG; Cytoplasmic Protein SciC; Type VI Secretion System Protein ImpG; Conserved Protein; Protein ImpG/VasA

Number of amino acids: Translated: 623; Mature: 623

Protein sequence:

>623_residues
MDPRLLRYYNLELQHLREMGAEFARQFPKIAARLGMDGIEVADPYVERLLEGAGFLAARVQLKLDAEFPRFTQRLLEMLH
PHYLAPTPAMLVAQFRPVPGETNLARGFTLPRGTPFRSPLGKGDAAACEFRTAHEIRLWPLELVQARYFSFAADLPLARL
PLAGRVRGGVRLTLRTTGGLKFSQLSLDTLNLHLGGAQEVAYRLCELIGAASLGALVQPAGGKGGWQRFIPSEQIRLTGY
DDDQALLPTAHRSFGGYRLVQEYFSFPERFLFFDVGGLAPALAQADDEIELVLLFGQGDAVLESVVDNANFLLHCTPAIN
LFPKRTDRIHVNDSGNEFHVVADRTRPMDYEIYELTEVLGHFHGSRDEQRFLPFYADFHSGTGDSQAYYSCRREPRLLSE
KQKKNGPRTGYVGSEVFLSLVDPREAPYRADLRQLSIQALCTNRDLPILLPQGGGQTDFSLDIAAPVEAIRCVRGPSRPY
GMLAEGASAWRLISHLALNHFSLVDADAHEGAGALREMLELYATSADVGMRRQVEGLKSVRVLPVVARLPFPGPICFGRG
LEIALEVDETAFEGGGAFVFGSVMEHFLARHASLNSFTQTTLRSLTRGVVMRWEPRCGKRTIL

Sequences:

>Translated_623_residues
MDPRLLRYYNLELQHLREMGAEFARQFPKIAARLGMDGIEVADPYVERLLEGAGFLAARVQLKLDAEFPRFTQRLLEMLH
PHYLAPTPAMLVAQFRPVPGETNLARGFTLPRGTPFRSPLGKGDAAACEFRTAHEIRLWPLELVQARYFSFAADLPLARL
PLAGRVRGGVRLTLRTTGGLKFSQLSLDTLNLHLGGAQEVAYRLCELIGAASLGALVQPAGGKGGWQRFIPSEQIRLTGY
DDDQALLPTAHRSFGGYRLVQEYFSFPERFLFFDVGGLAPALAQADDEIELVLLFGQGDAVLESVVDNANFLLHCTPAIN
LFPKRTDRIHVNDSGNEFHVVADRTRPMDYEIYELTEVLGHFHGSRDEQRFLPFYADFHSGTGDSQAYYSCRREPRLLSE
KQKKNGPRTGYVGSEVFLSLVDPREAPYRADLRQLSIQALCTNRDLPILLPQGGGQTDFSLDIAAPVEAIRCVRGPSRPY
GMLAEGASAWRLISHLALNHFSLVDADAHEGAGALREMLELYATSADVGMRRQVEGLKSVRVLPVVARLPFPGPICFGRG
LEIALEVDETAFEGGGAFVFGSVMEHFLARHASLNSFTQTTLRSLTRGVVMRWEPRCGKRTIL
>Mature_623_residues
MDPRLLRYYNLELQHLREMGAEFARQFPKIAARLGMDGIEVADPYVERLLEGAGFLAARVQLKLDAEFPRFTQRLLEMLH
PHYLAPTPAMLVAQFRPVPGETNLARGFTLPRGTPFRSPLGKGDAAACEFRTAHEIRLWPLELVQARYFSFAADLPLARL
PLAGRVRGGVRLTLRTTGGLKFSQLSLDTLNLHLGGAQEVAYRLCELIGAASLGALVQPAGGKGGWQRFIPSEQIRLTGY
DDDQALLPTAHRSFGGYRLVQEYFSFPERFLFFDVGGLAPALAQADDEIELVLLFGQGDAVLESVVDNANFLLHCTPAIN
LFPKRTDRIHVNDSGNEFHVVADRTRPMDYEIYELTEVLGHFHGSRDEQRFLPFYADFHSGTGDSQAYYSCRREPRLLSE
KQKKNGPRTGYVGSEVFLSLVDPREAPYRADLRQLSIQALCTNRDLPILLPQGGGQTDFSLDIAAPVEAIRCVRGPSRPY
GMLAEGASAWRLISHLALNHFSLVDADAHEGAGALREMLELYATSADVGMRRQVEGLKSVRVLPVVARLPFPGPICFGRG
LEIALEVDETAFEGGGAFVFGSVMEHFLARHASLNSFTQTTLRSLTRGVVMRWEPRCGKRTIL

Specific function: Unknown

COG id: COG3519

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69179; Mature: 69179

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPRLLRYYNLELQHLREMGAEFARQFPKIAARLGMDGIEVADPYVERLLEGAGFLAARV
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHCCCEEEEEE
QLKLDAEFPRFTQRLLEMLHPHYLAPTPAMLVAQFRPVPGETNLARGFTLPRGTPFRSPL
EEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
GKGDAAACEFRTAHEIRLWPLELVQARYFSFAADLPLARLPLAGRVRGGVRLTLRTTGGL
CCCCCCCEEECCCCCEEECHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEEEEECCCC
KFSQLSLDTLNLHLGGAQEVAYRLCELIGAASLGALVQPAGGKGGWQRFIPSEQIRLTGY
EEEEEEEEEEEEECCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHCCCCCCEEEECC
DDDQALLPTAHRSFGGYRLVQEYFSFPERFLFFDVGGLAPALAQADDEIELVLLFGQGDA
CCCCCCCCHHHHCCCHHHHHHHHHCCCHHEEEEECCCCCHHHHCCCCCEEEEEEECCCHH
VLESVVDNANFLLHCTPAINLFPKRTDRIHVNDSGNEFHVVADRTRPMDYEIYELTEVLG
HHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHH
HFHGSRDEQRFLPFYADFHSGTGDSQAYYSCRREPRLLSEKQKKNGPRTGYVGSEVFLSL
HHCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHEE
VDPREAPYRADLRQLSIQALCTNRDLPILLPQGGGQTDFSLDIAAPVEAIRCVRGPSRPY
CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCC
GMLAEGASAWRLISHLALNHFSLVDADAHEGAGALREMLELYATSADVGMRRQVEGLKSV
CHHHCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
RVLPVVARLPFPGPICFGRGLEIALEVDETAFEGGGAFVFGSVMEHFLARHASLNSFTQT
HHEEHHCCCCCCCCEEECCCCEEEEEECCCEECCCCCEEHHHHHHHHHHHHCCCHHHHHH
TLRSLTRGVVMRWEPRCGKRTIL
HHHHHHHCCEEEECCCCCCCCCC
>Mature Secondary Structure
MDPRLLRYYNLELQHLREMGAEFARQFPKIAARLGMDGIEVADPYVERLLEGAGFLAARV
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHCCCEEEEEE
QLKLDAEFPRFTQRLLEMLHPHYLAPTPAMLVAQFRPVPGETNLARGFTLPRGTPFRSPL
EEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
GKGDAAACEFRTAHEIRLWPLELVQARYFSFAADLPLARLPLAGRVRGGVRLTLRTTGGL
CCCCCCCEEECCCCCEEECHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEEEEECCCC
KFSQLSLDTLNLHLGGAQEVAYRLCELIGAASLGALVQPAGGKGGWQRFIPSEQIRLTGY
EEEEEEEEEEEEECCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHCCCCCCEEEECC
DDDQALLPTAHRSFGGYRLVQEYFSFPERFLFFDVGGLAPALAQADDEIELVLLFGQGDA
CCCCCCCCHHHHCCCHHHHHHHHHCCCHHEEEEECCCCCHHHHCCCCCEEEEEEECCCHH
VLESVVDNANFLLHCTPAINLFPKRTDRIHVNDSGNEFHVVADRTRPMDYEIYELTEVLG
HHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHH
HFHGSRDEQRFLPFYADFHSGTGDSQAYYSCRREPRLLSEKQKKNGPRTGYVGSEVFLSL
HHCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHEE
VDPREAPYRADLRQLSIQALCTNRDLPILLPQGGGQTDFSLDIAAPVEAIRCVRGPSRPY
CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCC
GMLAEGASAWRLISHLALNHFSLVDADAHEGAGALREMLELYATSADVGMRRQVEGLKSV
CHHHCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
RVLPVVARLPFPGPICFGRGLEIALEVDETAFEGGGAFVFGSVMEHFLARHASLNSFTQT
HHEEHHCCCCCCCCEEECCCCEEEEEECCCEECCCCCEEHHHHHHHHHHHHCCCHHHHHH
TLRSLTRGVVMRWEPRCGKRTIL
HHHHHHHCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA