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The map label for this gene is sciD

Identifier: 119900189

GI number: 119900189

Start: 4277167

End: 4277676

Strand: Direct

Name: sciD

Synonym: azo3900

Alternate gene names: NA

Gene position: 4277167-4277676 (Clockwise)

Preceding gene: 119900188

Following gene: 119900190

Centisome position: 97.74

GC content: 69.41

Gene sequence:

>510_bases
ATGGCTGACCTGCTGCCGCTCGACCGCCTGCAGCCGGCGCTGCTCGACCGCCTGCGCGACGACGCGCCGGACCAGCGCCA
CGAGGCCAAGGAAGCGCGCGTGCTCGGCCGCAGCCAGCTGCGCGAGGCGGTGCTGCGCGACCTCACCTGGCTGCTCAACG
CGATGCGCCCGCCGGAGCGGGAGGGCGTCGGGGTGTGGCCGGAGGTCGAGAACTCGGTGCTGAACTACGGCATGCCGTGC
TTTTCCGGGGAAACCGCGTCCTCGCTCGACATCACCGACCTCGAACGCGCAATCCGCGACTCGCTGCTGCGTTTCGAGCC
GCGCATCATCCCCGGCACGCTCGAGGTCAGCACCGAGCAGCACGAGAACATCCTCGACTGGCACAACGTGATCAGCGTGC
GCATCTCGGCGCAGATCTGGGCGCAGCCGGTGCCGCTCGAACTGCTGCTGCGCACCCAGCTCGACCTCGAAAGCGGCCTG
GTCGAGGTGCGCGACATCAACGGCTACTGA

Upstream 100 bases:

>100_bases
GACGGCGACTACCGCGGCCTCGGTCAGCGCCTGCTGACCACCGACGGCGCCGAATACGCCCTGCTCGACATCCGCCGCAT
CGAGTTCGACGCCACTGTCG

Downstream 100 bases:

>100_bases
ACACATGAAGCATCCCCTCCACGCACTGCGCATGACGCGCGCCGGCGGTGCCCGGCCGGCCCCCACGGCAACCACGGGAC
GGGCGGACACGTACTGACAT

Product: putative cytoplasmic protein SciD

Products: NA

Alternate protein names: GPW/Gp25 Family Protein; Cytoplasmic Protein; Cytoplasmic Protein SciD; Type VI Secretion System Lysozyme-Related Family Protein; Type VI Secretion System Lysozyme-Like Protein; Type VI Secretion System Core Protein; Type VI Secretion System Protein ImpF; Type VI Secretion System Lysozyme-Related Family

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MADLLPLDRLQPALLDRLRDDAPDQRHEAKEARVLGRSQLREAVLRDLTWLLNAMRPPEREGVGVWPEVENSVLNYGMPC
FSGETASSLDITDLERAIRDSLLRFEPRIIPGTLEVSTEQHENILDWHNVISVRISAQIWAQPVPLELLLRTQLDLESGL
VEVRDINGY

Sequences:

>Translated_169_residues
MADLLPLDRLQPALLDRLRDDAPDQRHEAKEARVLGRSQLREAVLRDLTWLLNAMRPPEREGVGVWPEVENSVLNYGMPC
FSGETASSLDITDLERAIRDSLLRFEPRIIPGTLEVSTEQHENILDWHNVISVRISAQIWAQPVPLELLLRTQLDLESGL
VEVRDINGY
>Mature_168_residues
ADLLPLDRLQPALLDRLRDDAPDQRHEAKEARVLGRSQLREAVLRDLTWLLNAMRPPEREGVGVWPEVENSVLNYGMPCF
SGETASSLDITDLERAIRDSLLRFEPRIIPGTLEVSTEQHENILDWHNVISVRISAQIWAQPVPLELLLRTQLDLESGLV
EVRDINGY

Specific function: Unknown

COG id: COG3518

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19266; Mature: 19135

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLLPLDRLQPALLDRLRDDAPDQRHEAKEARVLGRSQLREAVLRDLTWLLNAMRPPER
CCCCCCHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EGVGVWPEVENSVLNYGMPCFSGETASSLDITDLERAIRDSLLRFEPRIIPGTLEVSTEQ
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCHH
HENILDWHNVISVRISAQIWAQPVPLELLLRTQLDLESGLVEVRDINGY
HHHHHHHHHHHHHEEEHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCC
>Mature Secondary Structure 
ADLLPLDRLQPALLDRLRDDAPDQRHEAKEARVLGRSQLREAVLRDLTWLLNAMRPPER
CCCCCHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EGVGVWPEVENSVLNYGMPCFSGETASSLDITDLERAIRDSLLRFEPRIIPGTLEVSTEQ
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCHH
HENILDWHNVISVRISAQIWAQPVPLELLLRTQLDLESGLVEVRDINGY
HHHHHHHHHHHHHEEEHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA