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The map label for this gene is sciE

Identifier: 119900188

GI number: 119900188

Start: 4276353

End: 4277174

Strand: Direct

Name: sciE

Synonym: azo3899

Alternate gene names: NA

Gene position: 4276353-4277174 (Clockwise)

Preceding gene: 119900187

Following gene: 119900189

Centisome position: 97.72

GC content: 70.8

Gene sequence:

>822_bases
ATGTCCGCCCCCGCCAAAACCCTAGCCGACGCCGAAGCCGCGCTGCGCGCCGGCGACCCCGACGCCGCCCTCGCCCAGCT
GCAGGCCGCGGTACGGTCCCAGCCCGCCGATGCCAAGCTGCGTGTGTTCCTGTTCCAGTTGCTGGCCGTGCTCGGCCAGT
GGGAACGCGCCCTCAACCAGCTCAACGTCGCCACCGAACTCGACGCGTCCACGCTCGCGATGGCGCAGATGTACCGCGAG
ACGCTGCGCTGCGAAGTGCTGCGCGCCGAGGTCTTCGCCGGCAAGCGCGTTCCCTTGTTGTTCGGCGAACCCGAACAGTG
GCTCGCGCTGCTGCTCGAATCGCTGCTGACCGCGGGCCGCGGCGACCATGCCGCCGCGCTGCGCCTGCGCGAACAGGCGT
TCGAACTGGCACCCGCGAGCCCCGGCCGCATCGACGGCTCGCCCTTCGCGTGGCTCGCCGACGCCGACGGCCGCCTCGGC
CCGGTGTGCGAGGCGGTAATCAACGGCCGCTACTACTGGATTCCGTACGCGCGGCTCGCCAGCATCGACATCGAAGCGCC
GAGCGACCTGCGCGACTTCGTCTGGGCGCCCGCCCACTTCGTGTTCACCAACGGCGGCGAAACCGTGGGCGTGATCCCCA
CCCGCTACTCGGGTTCGGAAAGCGCCGCCGACGGCGCGCTCAAGCTCGGCCGCCGTACCGAATGGCTGGAGCACGACGGC
GACTACCGCGGCCTCGGTCAGCGCCTGCTGACCACCGACGGCGCCGAATACGCCCTGCTCGACATCCGCCGCATCGAGTT
CGACGCCACTGTCGATGGCTGA

Upstream 100 bases:

>100_bases
AATCGCCGTCGAATACCGCGGCCAGGAAGGCAGCGGCGGCGGCAACGCCGTATCGCGCTTCGAAACCGACGTCACGCCCC
AATAAGCCGAGGAGAGGACC

Downstream 100 bases:

>100_bases
CCTGCTGCCGCTCGACCGCCTGCAGCCGGCGCTGCTCGACCGCCTGCGCGACGACGCGCCGGACCAGCGCCACGAGGCCA
AGGAAGCGCGCGTGCTCGGC

Product: putative cytoplasmic protein SciE

Products: NA

Alternate protein names: ImpE Family Protein; Cytoplasmic Protein; Type VI Secretion System Protein ImpE; SciE Type Virulence Protein; ImpE-Like Protein; Virulence-Island/Protein Involved In Nitrogen Fixation; Virulence Protein SciE Type Family Protein; ImpE Family T6SS E; ImpE Protein Superfamily Protein; Secretion Protein; ImpE Protein; Cytoplasmic Protein SciE; Protein Of Avirulence Locus ImpE

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSAPAKTLADAEAALRAGDPDAALAQLQAAVRSQPADAKLRVFLFQLLAVLGQWERALNQLNVATELDASTLAMAQMYRE
TLRCEVLRAEVFAGKRVPLLFGEPEQWLALLLESLLTAGRGDHAAALRLREQAFELAPASPGRIDGSPFAWLADADGRLG
PVCEAVINGRYYWIPYARLASIDIEAPSDLRDFVWAPAHFVFTNGGETVGVIPTRYSGSESAADGALKLGRRTEWLEHDG
DYRGLGQRLLTTDGAEYALLDIRRIEFDATVDG

Sequences:

>Translated_273_residues
MSAPAKTLADAEAALRAGDPDAALAQLQAAVRSQPADAKLRVFLFQLLAVLGQWERALNQLNVATELDASTLAMAQMYRE
TLRCEVLRAEVFAGKRVPLLFGEPEQWLALLLESLLTAGRGDHAAALRLREQAFELAPASPGRIDGSPFAWLADADGRLG
PVCEAVINGRYYWIPYARLASIDIEAPSDLRDFVWAPAHFVFTNGGETVGVIPTRYSGSESAADGALKLGRRTEWLEHDG
DYRGLGQRLLTTDGAEYALLDIRRIEFDATVDG
>Mature_272_residues
SAPAKTLADAEAALRAGDPDAALAQLQAAVRSQPADAKLRVFLFQLLAVLGQWERALNQLNVATELDASTLAMAQMYRET
LRCEVLRAEVFAGKRVPLLFGEPEQWLALLLESLLTAGRGDHAAALRLREQAFELAPASPGRIDGSPFAWLADADGRLGP
VCEAVINGRYYWIPYARLASIDIEAPSDLRDFVWAPAHFVFTNGGETVGVIPTRYSGSESAADGALKLGRRTEWLEHDGD
YRGLGQRLLTTDGAEYALLDIRRIEFDATVDG

Specific function: Unknown

COG id: COG4455

COG function: function code R; Protein of avirulence locus involved in temperature-dependent protein secretion

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29724; Mature: 29593

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPAKTLADAEAALRAGDPDAALAQLQAAVRSQPADAKLRVFLFQLLAVLGQWERALNQ
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LNVATELDASTLAMAQMYRETLRCEVLRAEVFAGKRVPLLFGEPEQWLALLLESLLTAGR
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCC
GDHAAALRLREQAFELAPASPGRIDGSPFAWLADADGRLGPVCEAVINGRYYWIPYARLA
CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCEEEEEEHHHEE
SIDIEAPSDLRDFVWAPAHFVFTNGGETVGVIPTRYSGSESAADGALKLGRRTEWLEHDG
EEECCCCCHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCHHCCHHHHHCCHHHHHHCCC
DYRGLGQRLLTTDGAEYALLDIRRIEFDATVDG
CHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCC
>Mature Secondary Structure 
SAPAKTLADAEAALRAGDPDAALAQLQAAVRSQPADAKLRVFLFQLLAVLGQWERALNQ
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LNVATELDASTLAMAQMYRETLRCEVLRAEVFAGKRVPLLFGEPEQWLALLLESLLTAGR
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCC
GDHAAALRLREQAFELAPASPGRIDGSPFAWLADADGRLGPVCEAVINGRYYWIPYARLA
CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCEEEEEEHHHEE
SIDIEAPSDLRDFVWAPAHFVFTNGGETVGVIPTRYSGSESAADGALKLGRRTEWLEHDG
EEECCCCCHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCHHCCHHHHHCCHHHHHHCCC
DYRGLGQRLLTTDGAEYALLDIRRIEFDATVDG
CHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA