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The map label for this gene is sciH

Identifier: 119900184

GI number: 119900184

Start: 4272962

End: 4273471

Strand: Direct

Name: sciH

Synonym: azo3895

Alternate gene names: NA

Gene position: 4272962-4273471 (Clockwise)

Preceding gene: 119900183

Following gene: 119900185

Centisome position: 97.64

GC content: 64.51

Gene sequence:

>510_bases
ATGTCGAGCAGCAGCCAGAAGTTCATCGCGCGCAACCGTGCGCCGCGCGTGCAGATCGAATACGACGTCGAACTCTACGG
CGCCGAGAAGAAAGTCCAGCTCCCGTTCGTCATGGGCGTGCTGTCCGACCTGTCGGGCAAGCCGGCCGAACCGCTGGCGC
CGGTGGCCGACCGCAAGTTCCTGGAAATCGACGTCGACAATTTCGACAGCCGCATGAAGTCGATGAAGCCGCGGGTCGCC
TTCCAGGTGCCCAACACGCTGACCGGCGAAGGCAACCTGAACGTCGAACTCACCTTCGACAGCATGGACGACTTCTCGCC
GGCCGCGGTCGCGCGCAAGGTGGATTCGCTCAACAAGCTGCTCACCGCCCGCCAGCAGCTCTCCAACCTGATCACCTACA
TGGACGGCAAGACCGGCGCCGAGGAACTGATCGCCAAGGTGCTGCAGGACCCCGCGCTGCTGCAGACGCTGGCCGCCGCG
CCCAAGCCCGAAGACAAGCCGGCCGAATAA

Upstream 100 bases:

>100_bases
ACAAGCCGAGCGCATGGTCGGCGGCCAGCTCAACCCCGAGCAGGACGACTAGCAAGGCACCCGCCCCAACGGCTTCACCC
TTTCCTGACGGAGGACCACC

Downstream 100 bases:

>100_bases
GCCCGCGCTTCACCGCACACCCAGCCCACATCCGGAGCCGAGGAACACACCATGGCTGACACGCAAGCCCAGAACGAAGC
CCAGGCCGGCGGCCTGGCCA

Product: putative cytoplasmic protein,SciH

Products: NA

Alternate protein names: T6ss S; Type VI Secretion Protein Family; Conserved Protein; Cytoplasmic Protein SciH; Cytoplasmic Protein; Type VI Secretion System Protein; Protein ImpB; Type VI Secretion; Type VI Secretion System Core Protein; Type VI Secretion System Protein ImpB

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSSSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVLSDLSGKPAEPLAPVADRKFLEIDVDNFDSRMKSMKPRVA
FQVPNTLTGEGNLNVELTFDSMDDFSPAAVARKVDSLNKLLTARQQLSNLITYMDGKTGAEELIAKVLQDPALLQTLAAA
PKPEDKPAE

Sequences:

>Translated_169_residues
MSSSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVLSDLSGKPAEPLAPVADRKFLEIDVDNFDSRMKSMKPRVA
FQVPNTLTGEGNLNVELTFDSMDDFSPAAVARKVDSLNKLLTARQQLSNLITYMDGKTGAEELIAKVLQDPALLQTLAAA
PKPEDKPAE
>Mature_168_residues
SSSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVLSDLSGKPAEPLAPVADRKFLEIDVDNFDSRMKSMKPRVAF
QVPNTLTGEGNLNVELTFDSMDDFSPAAVARKVDSLNKLLTARQQLSNLITYMDGKTGAEELIAKVLQDPALLQTLAAAP
KPEDKPAE

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18582; Mature: 18451

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVLSDLSGKPAEPLAPVADRKF
CCCCCHHHHHHCCCCEEEEEEEEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCEE
LEIDVDNFDSRMKSMKPRVAFQVPNTLTGEGNLNVELTFDSMDDFSPAAVARKVDSLNKL
EEEECCCHHHHHHHCCCCEEEECCCEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
LTARQQLSNLITYMDGKTGAEELIAKVLQDPALLQTLAAAPKPEDKPAE
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SSSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVLSDLSGKPAEPLAPVADRKF
CCCCHHHHHHCCCCEEEEEEEEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCEE
LEIDVDNFDSRMKSMKPRVAFQVPNTLTGEGNLNVELTFDSMDDFSPAAVARKVDSLNKL
EEEECCCHHHHHHHCCCCEEEECCCEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
LTARQQLSNLITYMDGKTGAEELIAKVLQDPALLQTLAAAPKPEDKPAE
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA