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The map label for this gene is sciA

Identifier: 119900183

GI number: 119900183

Start: 4271852

End: 4272913

Strand: Direct

Name: sciA

Synonym: azo3894

Alternate gene names: NA

Gene position: 4271852-4272913 (Clockwise)

Preceding gene: 119900176

Following gene: 119900184

Centisome position: 97.62

GC content: 71.0

Gene sequence:

>1062_bases
ATGTCGCTGGAACTCGATCTCGACACACTGCTGGCACCGCTGGGCGATGACCAACCCTGCGGCCCCAACCTCGAATACGA
CGCCGACTTCCTCCAGATGGAAGAGGCCGCGCGCGGGCAAGCCGGCCAGGAGTTCGCGAGCGACAGCGGCAGCAAGGTCA
GCATCGATGGCCAGGAAGCGGACTGGCCCGCGGTGCGCCGGCTCGCCGAGGGCCTCCTCGAGCGCACCCGGGACGTCCGC
GTCGCGGTCTATTACACCCGCGCGCTGCTGCGCACCGAAGGCTATCCCGGCATCCACGCGGGACTCCGCCTGATCGTCGG
CCTGCTCGAACAGCACTGGGCCGGCGTCCACCCCGAACTCGACGCCGACGACAACGACGACCCGACGATGCGGGTGAATG
CGCTGGCGCCGCTGGTTGCCAACGACGCGGTGATCGGCGACCTGCGCGCCAGCACGCTGTTGCGCTCGCGCCAGTCCGGC
GTGCTGACGGTGCGCAACATCGAGGTCACCCAGGGCAAGCTCAGCGCGCGCGACGGCGAACAGGTGCTGGCCGAGTCCCA
GGTGGCCGGCATGCTGGCCGAAGCGGTCGCGGCCGATCCCACCCTGGCCGACGCGATCACCGACAGCGTCGCGCTCGCCC
GCCAGCTCTCCGGCTTCCTGCAGGATCAGGTGGGCGCCGGCGCCAGCATCGATTTCAAGCCGCTGCAGAACGTCCTTTAC
GCCGTGCAGCAGGCGCTCGGCGGCGTTGCGCTGCCCGCTGCCGACGGCCCGGGCGAGGCCGCGGCCGGTGAGGAAGGCGC
CCCGGCCGGCGTGCCGGCCGCCGGCACGCCCGCGGCCCCGGGCGAAATCCGCTCGCGCGCCGACGTCGTCGCCACCATCG
ACCGCCTGGTGACCTACCTCGAACGCAGCGAACCGACCAACCCCGCGCAGTGGCTGCTGCGGCGTGCCCAGCGGGTGATG
AACATGAACTTCCTCGAAGCCATCGTCGAACTTGCCCCCGATGGTCTCGAACAAGCCGAGCGCATGGTCGGCGGCCAGCT
CAACCCCGAGCAGGACGACTAG

Upstream 100 bases:

>100_bases
GCGAATCTTATTCAATTACTATATCGCTCCAATTCGGGGGGGCCGCCCGTCAGCGTATGCGAGGCGGGCACTGCCGGCTC
TCCAAGCACCGGAACACAAC

Downstream 100 bases:

>100_bases
CAAGGCACCCGCCCCAACGGCTTCACCCTTTCCTGACGGAGGACCACCATGTCGAGCAGCAGCCAGAAGTTCATCGCGCG
CAACCGTGCGCCGCGCGTGC

Product: putative cytoplasmic protein

Products: NA

Alternate protein names: ImpA Domain-Containing Protein; Cytoplasmic Protein; ImpA-Related N-Terminal Domain-Containing; ImpA Family Type VI Secretion-Associated Protein; ImpA-Like; Replication/Virulence Associated Protein; Type VI Secretion-Associated Protein; ImpA-Related N-Terminal Family Protein; Type VI Secretion System Core Protein; Conserved Protein; Type VI Secretion System Protein ImpA; ImpA-Like Protein

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MSLELDLDTLLAPLGDDQPCGPNLEYDADFLQMEEAARGQAGQEFASDSGSKVSIDGQEADWPAVRRLAEGLLERTRDVR
VAVYYTRALLRTEGYPGIHAGLRLIVGLLEQHWAGVHPELDADDNDDPTMRVNALAPLVANDAVIGDLRASTLLRSRQSG
VLTVRNIEVTQGKLSARDGEQVLAESQVAGMLAEAVAADPTLADAITDSVALARQLSGFLQDQVGAGASIDFKPLQNVLY
AVQQALGGVALPAADGPGEAAAGEEGAPAGVPAAGTPAAPGEIRSRADVVATIDRLVTYLERSEPTNPAQWLLRRAQRVM
NMNFLEAIVELAPDGLEQAERMVGGQLNPEQDD

Sequences:

>Translated_353_residues
MSLELDLDTLLAPLGDDQPCGPNLEYDADFLQMEEAARGQAGQEFASDSGSKVSIDGQEADWPAVRRLAEGLLERTRDVR
VAVYYTRALLRTEGYPGIHAGLRLIVGLLEQHWAGVHPELDADDNDDPTMRVNALAPLVANDAVIGDLRASTLLRSRQSG
VLTVRNIEVTQGKLSARDGEQVLAESQVAGMLAEAVAADPTLADAITDSVALARQLSGFLQDQVGAGASIDFKPLQNVLY
AVQQALGGVALPAADGPGEAAAGEEGAPAGVPAAGTPAAPGEIRSRADVVATIDRLVTYLERSEPTNPAQWLLRRAQRVM
NMNFLEAIVELAPDGLEQAERMVGGQLNPEQDD
>Mature_352_residues
SLELDLDTLLAPLGDDQPCGPNLEYDADFLQMEEAARGQAGQEFASDSGSKVSIDGQEADWPAVRRLAEGLLERTRDVRV
AVYYTRALLRTEGYPGIHAGLRLIVGLLEQHWAGVHPELDADDNDDPTMRVNALAPLVANDAVIGDLRASTLLRSRQSGV
LTVRNIEVTQGKLSARDGEQVLAESQVAGMLAEAVAADPTLADAITDSVALARQLSGFLQDQVGAGASIDFKPLQNVLYA
VQQALGGVALPAADGPGEAAAGEEGAPAGVPAAGTPAAPGEIRSRADVVATIDRLVTYLERSEPTNPAQWLLRRAQRVMN
MNFLEAIVELAPDGLEQAERMVGGQLNPEQDD

Specific function: Unknown

COG id: COG3515

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37414; Mature: 37283

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLELDLDTLLAPLGDDQPCGPNLEYDADFLQMEEAARGQAGQEFASDSGSKVSIDGQEA
CCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCC
DWPAVRRLAEGLLERTRDVRVAVYYTRALLRTEGYPGIHAGLRLIVGLLEQHWAGVHPEL
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
DADDNDDPTMRVNALAPLVANDAVIGDLRASTLLRSRQSGVLTVRNIEVTQGKLSARDGE
CCCCCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCHH
QVLAESQVAGMLAEAVAADPTLADAITDSVALARQLSGFLQDQVGAGASIDFKPLQNVLY
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
AVQQALGGVALPAADGPGEAAAGEEGAPAGVPAAGTPAAPGEIRSRADVVATIDRLVTYL
HHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ERSEPTNPAQWLLRRAQRVMNMNFLEAIVELAPDGLEQAERMVGGQLNPEQDD
HHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SLELDLDTLLAPLGDDQPCGPNLEYDADFLQMEEAARGQAGQEFASDSGSKVSIDGQEA
CCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCC
DWPAVRRLAEGLLERTRDVRVAVYYTRALLRTEGYPGIHAGLRLIVGLLEQHWAGVHPEL
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
DADDNDDPTMRVNALAPLVANDAVIGDLRASTLLRSRQSGVLTVRNIEVTQGKLSARDGE
CCCCCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCHH
QVLAESQVAGMLAEAVAADPTLADAITDSVALARQLSGFLQDQVGAGASIDFKPLQNVLY
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
AVQQALGGVALPAADGPGEAAAGEEGAPAGVPAAGTPAAPGEIRSRADVVATIDRLVTYL
HHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ERSEPTNPAQWLLRRAQRVMNMNFLEAIVELAPDGLEQAERMVGGQLNPEQDD
HHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA