Click here to switch to the map view.

The map label for this gene is ompA1 [H]

Identifier: 119898879

GI number: 119898879

Start: 2867629

End: 2868345

Strand: Direct

Name: ompA1 [H]

Synonym: azo2588

Alternate gene names: 119898879

Gene position: 2867629-2868345 (Clockwise)

Preceding gene: 119898878

Following gene: 119898880

Centisome position: 65.53

GC content: 65.69

Gene sequence:

>717_bases
ATGATCAAACACACCAAGAAACAGATGCTCATGCTGGCCGCGATCGCCTCGATCGGCTTGTCCGCTTCCGCCGCCTTCGC
CCAAGCGAAGGACGTGGTCGTCGATGGCAAGGGCGAAGTTCCGTACGTGATCGACGCCCGCAACGCGGTTGCCCGCAGCG
GCACCGGCCTGTGCTGGCGCACCGGCTACTGGAGCCCGGCCGCCGCCTCCACCGCCATGGCCGGTGAGTTCCCCGCCGGT
TGCGAATGCGACGGCGACATCGTTCCGAAGGAAAAGTGTACCGCCGCCACCGCGGCTGCTCCGGCTGCCCCCGCTCCCGC
TGGCGGCCCGGCTCCGCTGGCCGACAAGATCAAGCTGTCCGCCGACACCCTGTTCGACTTCGACAAGGCCGTGCTGAAGC
CGGAAGGCCGCACCAAGCTGGACGACCTGGCCGCCAAGGCCAAGGGCATCAAGCTTGAAGTCATCCTGGCCGTCGGCCAC
ACCGACCGTCTGGGTTCCGACTCCTACAACCAGAAGCTGTCCGAGCGCCGCGCTGCCGCCGTGAAGACCTACCTGGTCAG
CAAGGGTGTCGAAGCCAACCGCGTCTACACCGAAGGCAAGGGCGAAAAGCAGCCCGTGACCGGCAACAAGTGCGACTCCG
TCAAGAACCGCAAGGCGCTGATCGAGTGCCTGCAGCCGGACCGCCGCGTTGAAGTTGAAGTGATCGGCTCCAAGTAA

Upstream 100 bases:

>100_bases
CCGGCTCGATCCGACAAGAATTCGGCTATGTTGAGGCTGTATTCCTGCTTTAATTCGAAAGCAGCGGCGCTTTCAGTCTT
TGCCCTTCAATGAGGAAACC

Downstream 100 bases:

>100_bases
TACGCCGCATCGCAATGAAAGCCCTGCTCCGGCAGGGCTTTTTCATTTTGTGCGAACCCTGCCGCCGGTTCCCGGCTGCA
CCTCCCTGCCCTGCGAGGCC

Product: outer membrane protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MIKHTKKQMLMLAAIASIGLSASAAFAQAKDVVVDGKGEVPYVIDARNAVARSGTGLCWRTGYWSPAAASTAMAGEFPAG
CECDGDIVPKEKCTAATAAAPAAPAPAGGPAPLADKIKLSADTLFDFDKAVLKPEGRTKLDDLAAKAKGIKLEVILAVGH
TDRLGSDSYNQKLSERRAAAVKTYLVSKGVEANRVYTEGKGEKQPVTGNKCDSVKNRKALIECLQPDRRVEVEVIGSK

Sequences:

>Translated_238_residues
MIKHTKKQMLMLAAIASIGLSASAAFAQAKDVVVDGKGEVPYVIDARNAVARSGTGLCWRTGYWSPAAASTAMAGEFPAG
CECDGDIVPKEKCTAATAAAPAAPAPAGGPAPLADKIKLSADTLFDFDKAVLKPEGRTKLDDLAAKAKGIKLEVILAVGH
TDRLGSDSYNQKLSERRAAAVKTYLVSKGVEANRVYTEGKGEKQPVTGNKCDSVKNRKALIECLQPDRRVEVEVIGSK
>Mature_238_residues
MIKHTKKQMLMLAAIASIGLSASAAFAQAKDVVVDGKGEVPYVIDARNAVARSGTGLCWRTGYWSPAAASTAMAGEFPAG
CECDGDIVPKEKCTAATAAAPAAPAPAGGPAPLADKIKLSADTLFDFDKAVLKPEGRTKLDDLAAKAKGIKLEVILAVGH
TDRLGSDSYNQKLSERRAAAVKTYLVSKGVEANRVYTEGKGEKQPVTGNKCDSVKNRKALIECLQPDRRVEVEVIGSK

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=125, Percent_Identity=53.6, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI48994946, Length=118, Percent_Identity=29.6610169491525, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 24986; Mature: 24986

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKHTKKQMLMLAAIASIGLSASAAFAQAKDVVVDGKGEVPYVIDARNAVARSGTGLCWR
CCCCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEECCCCCCEEEECCHHHHHCCCCCEEE
TGYWSPAAASTAMAGEFPAGCECDGDIVPKEKCTAATAAAPAAPAPAGGPAPLADKIKLS
CCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHEEEC
ADTLFDFDKAVLKPEGRTKLDDLAAKAKGIKLEVILAVGHTDRLGSDSYNQKLSERRAAA
HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
VKTYLVSKGVEANRVYTEGKGEKQPVTGNKCDSVKNRKALIECLQPDRRVEVEVIGSK
HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC
>Mature Secondary Structure
MIKHTKKQMLMLAAIASIGLSASAAFAQAKDVVVDGKGEVPYVIDARNAVARSGTGLCWR
CCCCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEECCCCCCEEEECCHHHHHCCCCCEEE
TGYWSPAAASTAMAGEFPAGCECDGDIVPKEKCTAATAAAPAAPAPAGGPAPLADKIKLS
CCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHEEEC
ADTLFDFDKAVLKPEGRTKLDDLAAKAKGIKLEVILAVGHTDRLGSDSYNQKLSERRAAA
HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
VKTYLVSKGVEANRVYTEGKGEKQPVTGNKCDSVKNRKALIECLQPDRRVEVEVIGSK
HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]