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The map label for this gene is dnaQ [H]

Identifier: 119898701

GI number: 119898701

Start: 2660014

End: 2662218

Strand: Reverse

Name: dnaQ [H]

Synonym: azo2410

Alternate gene names: 119898701

Gene position: 2662218-2660014 (Counterclockwise)

Preceding gene: 119898702

Following gene: 119898700

Centisome position: 60.84

GC content: 68.34

Gene sequence:

>2205_bases
ATGACGGCGGGACACTCCGCGCGTAACCGGCTGGGCGTTGCGGTGCTGCTTACCGCGCTCTTCATCCTCGCCGTGTTCGC
GGTCATCGGCGCCACGCTATGGTCCGATCTCGGCGTCGCCGAGCGCGATCTCGCGGAAACCCTGCTGGCGCCGCGCGCCG
GCTTGCTGATCGTGATCCTCGCGCTGGCGGTGGGGCTGGCTGCCGCGGCGGTGAAGACGCTGCACGAAACCCATGTGCTG
GCCCCCGCGCGCCTGCTGGAAGAGGCGCAGGTGCTGCTCACCAACCCCGACGCACCGCGCCTGCAGCCGTCCGGCAGCGC
CGAGATGCGGGCGCTCGCCGAGGTGATCAACACGCTGGCGGCACAGCGCGGTGTGCTGCGCCGCGACGTCGAGGCGCGCA
TCCGCGAGGCCAAGAACAGCGTCGAGGAAGAGAAGAACAGGCTGGCGGCGCTGATGTCCGAGCTGACGCAGAGCGTGCTG
GTATGCAATCTCGACGGCCGGGTGCTGCTGTACAACAACCGCGCGCGGCTGCAGTTCCGCGCCATGTCCGACACCCCGGG
CGCGGCCGGCGGCGGCGAACTCATCGGCCTCGGCCGCTCGATCTACACGGTGTTCGAGCGCAACCTGATCGCGCATGCGC
TGGAAACCATCCAGCACCGCCTGCGCCGCACCGCCCAGCCGGTCGCCAACTTCGTCACCACCACCCGCAGCGGCCAGTTG
CTGCGGGTGCAGATGGCGCCGGTGCTCACCACCGCCGCCGAGGCCCTGATCGGCGACACGGCTCAACCGGCGGTGGCCGA
GCGGACGATGACCGGCTTCATCCTGATGCTCGACAACATCACGCGCAATTTCGAGGCCGAGTCGCGTCGCGACCAGATGC
TGCACAGCATGACCGAGGGCAACCGCGCCGCGCTCGGCAACGTGCGCGCGGCGGTCGAGATGCTCGATTTCCCCGACCTG
CAGGACGAGTTGCGGGAGCGCTTCCGCAAGGTGGTGCGTGACGAGGTGCAGGCGATGAGCGCGCGGTTGGACCAGACCGC
CACCGAGTTCGCGGATTCGCTGAAAGCGCGCTGGCCGCTGGAGGAAATGCTGGGGGCCGACCTGATCGCCGCCGCCCAGC
GCCGCATCGAGAACCGCGTCCATCTGCCGACCAAGCTGGAGGACGTCGACGAATCGCTGTGGGTGAAGGTGGACAGCTTT
TCGCTGATCCAGGCGCTCACCTATCTCGCCAGCCGCCTGTCGGACGAATTCGAGGTGCGCGAGGTGCGTTTCCGCCTGAC
CCCGGCCGGCCGCCTGGCACACCTCGACCTGATCTGGTCCGGGCAGGCGATGAGCACCGAAACCGTGATGAGCTGGGAGC
TGGAGGCGATGAACTTCGCCGGCGAACACAGCCCGCTCACGGTGCGCGACGTCATCGAGCGCCACGGCGGCGAGATGTGG
CTGGAGCGCGAGAAGGTGCGCCACCGGGCGTTCTTCCGCATCCTGCTGCCGGCCGCGATGCCGCAGGAGCAGCTCGACGA
ATCCATGCTGCTGCGCGCCGACAGCCGTCCCGAGTACTACGACTTCGACCTGTTCAAGTGGTCGGAGCGTTCGCGCGCCC
TCGAAGACCGCCTGCTGACCGAGCTGACCTACACGGTGTTCGACACCGAGACCACCGGCCTCAACCCTTCGCAGGGCGAC
GAGATCATCCAGATCGGCGCGGTGCGGGTGCTCAACGGCAAGCCGCTGCGCAGCGAAGCCTTCGAGCAACTGATCGACCC
CTGCCGCCCGCTGCCGGAAGAATCGGCCCGGGTGCATGGCATCACCGCCGACATGCTGGCGGGGCAGCCGGTCATCGAGG
CAGTGCTGCCGTCCTTCCACGCCTTCGCGGCGGATACCGTGCTGGTGGCGCACAACGCCGCGTTCGACATGCGCTTCCTG
CAGCTCAAGGAAGACCTCACCGGGCTGCGCTTCGACCAGCCGGTGCTTGATACGCTGCTGCTGTCAGCGGTGATCCATCC
GAACCAGGATTCGCACCGGCTGGAGGCGATCGCCGAGCGCCTGGGCATTACCGTGGTGGGGCGCCACACCGCGCTGGGCG
ATGCGATGGTGACCGCCGAGGTGTTCCTGAAGCTGGTGCCGCTGCTGGCGGAAAAGGGCATCCGCACGCTGCGCGAGGCG
CGCGAGGCGGCGGAAAAGTCGTACTACGCCCGGATCAAGTATTGA

Upstream 100 bases:

>100_bases
GCTTCGCCCGCGCACGGAGGCCCCAAGGCGGCCGGAGCCAACCCGGCGCCGGCGCCGCAGGCCCGGTCACGTCCGGAGGT
GTGCGGTGAGCGCCGTGCAG

Downstream 100 bases:

>100_bases
TGGCCGGCAGCCCCTGCAACCCGCCGCGCCGAGGGCGCGCATGAACACGGGCGCCTTCTCGCGCCGGCTGCGGCGCTATT
ACGGCTGGTACACCGGCACC

Product: DNA polymerase III epsilon subunit-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 734; Mature: 733

Protein sequence:

>734_residues
MTAGHSARNRLGVAVLLTALFILAVFAVIGATLWSDLGVAERDLAETLLAPRAGLLIVILALAVGLAAAAVKTLHETHVL
APARLLEEAQVLLTNPDAPRLQPSGSAEMRALAEVINTLAAQRGVLRRDVEARIREAKNSVEEEKNRLAALMSELTQSVL
VCNLDGRVLLYNNRARLQFRAMSDTPGAAGGGELIGLGRSIYTVFERNLIAHALETIQHRLRRTAQPVANFVTTTRSGQL
LRVQMAPVLTTAAEALIGDTAQPAVAERTMTGFILMLDNITRNFEAESRRDQMLHSMTEGNRAALGNVRAAVEMLDFPDL
QDELRERFRKVVRDEVQAMSARLDQTATEFADSLKARWPLEEMLGADLIAAAQRRIENRVHLPTKLEDVDESLWVKVDSF
SLIQALTYLASRLSDEFEVREVRFRLTPAGRLAHLDLIWSGQAMSTETVMSWELEAMNFAGEHSPLTVRDVIERHGGEMW
LEREKVRHRAFFRILLPAAMPQEQLDESMLLRADSRPEYYDFDLFKWSERSRALEDRLLTELTYTVFDTETTGLNPSQGD
EIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITADMLAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFL
QLKEDLTGLRFDQPVLDTLLLSAVIHPNQDSHRLEAIAERLGITVVGRHTALGDAMVTAEVFLKLVPLLAEKGIRTLREA
REAAEKSYYARIKY

Sequences:

>Translated_734_residues
MTAGHSARNRLGVAVLLTALFILAVFAVIGATLWSDLGVAERDLAETLLAPRAGLLIVILALAVGLAAAAVKTLHETHVL
APARLLEEAQVLLTNPDAPRLQPSGSAEMRALAEVINTLAAQRGVLRRDVEARIREAKNSVEEEKNRLAALMSELTQSVL
VCNLDGRVLLYNNRARLQFRAMSDTPGAAGGGELIGLGRSIYTVFERNLIAHALETIQHRLRRTAQPVANFVTTTRSGQL
LRVQMAPVLTTAAEALIGDTAQPAVAERTMTGFILMLDNITRNFEAESRRDQMLHSMTEGNRAALGNVRAAVEMLDFPDL
QDELRERFRKVVRDEVQAMSARLDQTATEFADSLKARWPLEEMLGADLIAAAQRRIENRVHLPTKLEDVDESLWVKVDSF
SLIQALTYLASRLSDEFEVREVRFRLTPAGRLAHLDLIWSGQAMSTETVMSWELEAMNFAGEHSPLTVRDVIERHGGEMW
LEREKVRHRAFFRILLPAAMPQEQLDESMLLRADSRPEYYDFDLFKWSERSRALEDRLLTELTYTVFDTETTGLNPSQGD
EIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITADMLAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFL
QLKEDLTGLRFDQPVLDTLLLSAVIHPNQDSHRLEAIAERLGITVVGRHTALGDAMVTAEVFLKLVPLLAEKGIRTLREA
REAAEKSYYARIKY
>Mature_733_residues
TAGHSARNRLGVAVLLTALFILAVFAVIGATLWSDLGVAERDLAETLLAPRAGLLIVILALAVGLAAAAVKTLHETHVLA
PARLLEEAQVLLTNPDAPRLQPSGSAEMRALAEVINTLAAQRGVLRRDVEARIREAKNSVEEEKNRLAALMSELTQSVLV
CNLDGRVLLYNNRARLQFRAMSDTPGAAGGGELIGLGRSIYTVFERNLIAHALETIQHRLRRTAQPVANFVTTTRSGQLL
RVQMAPVLTTAAEALIGDTAQPAVAERTMTGFILMLDNITRNFEAESRRDQMLHSMTEGNRAALGNVRAAVEMLDFPDLQ
DELRERFRKVVRDEVQAMSARLDQTATEFADSLKARWPLEEMLGADLIAAAQRRIENRVHLPTKLEDVDESLWVKVDSFS
LIQALTYLASRLSDEFEVREVRFRLTPAGRLAHLDLIWSGQAMSTETVMSWELEAMNFAGEHSPLTVRDVIERHGGEMWL
EREKVRHRAFFRILLPAAMPQEQLDESMLLRADSRPEYYDFDLFKWSERSRALEDRLLTELTYTVFDTETTGLNPSQGDE
IIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITADMLAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQ
LKEDLTGLRFDQPVLDTLLLSAVIHPNQDSHRLEAIAERLGITVVGRHTALGDAMVTAEVFLKLVPLLAEKGIRTLREAR
EAAEKSYYARIKY

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG2176

COG function: function code L; DNA polymerase III, alpha subunit (gram-positive type)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1786409, Length=171, Percent_Identity=35.0877192982456, Blast_Score=80, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR000014
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 81691; Mature: 81560

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGHSARNRLGVAVLLTALFILAVFAVIGATLWSDLGVAERDLAETLLAPRAGLLIVIL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
ALAVGLAAAAVKTLHETHVLAPARLLEEAQVLLTNPDAPRLQPSGSAEMRALAEVINTLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
AQRGVLRRDVEARIREAKNSVEEEKNRLAALMSELTQSVLVCNLDGRVLLYNNRARLQFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCEEEEE
AMSDTPGAAGGGELIGLGRSIYTVFERNLIAHALETIQHRLRRTAQPVANFVTTTRSGQL
EECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
LRVQMAPVLTTAAEALIGDTAQPAVAERTMTGFILMLDNITRNFEAESRRDQMLHSMTEG
EEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEHHHHCCCCHHHHHHHHHHHHHCC
NRAALGNVRAAVEMLDFPDLQDELRERFRKVVRDEVQAMSARLDQTATEFADSLKARWPL
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
EEMLGADLIAAAQRRIENRVHLPTKLEDVDESLWVKVDSFSLIQALTYLASRLSDEFEVR
HHHHCHHHHHHHHHHHHCCCCCCCHHHHCCHHHEEEECHHHHHHHHHHHHHHCCCHHEEE
EVRFRLTPAGRLAHLDLIWSGQAMSTETVMSWELEAMNFAGEHSPLTVRDVIERHGGEMW
HHHEEECCCCCEEEEEEEECCCCCCCHHHHHEEHHHHHCCCCCCCCHHHHHHHHCCCHHH
LEREKVRHRAFFRILLPAAMPQEQLDESMLLRADSRPEYYDFDLFKWSERSRALEDRLLT
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHH
ELTYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHG
HHHHHEEECCCCCCCCCCCCCEEEECCEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECC
ITADMLAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRFDQPVLDTLL
CHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHH
LSAVIHPNQDSHRLEAIAERLGITVVGRHTALGDAMVTAEVFLKLVPLLAEKGIRTLREA
HHHHHCCCCCHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAAEKSYYARIKY
HHHHHHHHHEEECC
>Mature Secondary Structure 
TAGHSARNRLGVAVLLTALFILAVFAVIGATLWSDLGVAERDLAETLLAPRAGLLIVIL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
ALAVGLAAAAVKTLHETHVLAPARLLEEAQVLLTNPDAPRLQPSGSAEMRALAEVINTLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
AQRGVLRRDVEARIREAKNSVEEEKNRLAALMSELTQSVLVCNLDGRVLLYNNRARLQFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCEEEEE
AMSDTPGAAGGGELIGLGRSIYTVFERNLIAHALETIQHRLRRTAQPVANFVTTTRSGQL
EECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
LRVQMAPVLTTAAEALIGDTAQPAVAERTMTGFILMLDNITRNFEAESRRDQMLHSMTEG
EEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEHHHHCCCCHHHHHHHHHHHHHCC
NRAALGNVRAAVEMLDFPDLQDELRERFRKVVRDEVQAMSARLDQTATEFADSLKARWPL
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
EEMLGADLIAAAQRRIENRVHLPTKLEDVDESLWVKVDSFSLIQALTYLASRLSDEFEVR
HHHHCHHHHHHHHHHHHCCCCCCCHHHHCCHHHEEEECHHHHHHHHHHHHHHCCCHHEEE
EVRFRLTPAGRLAHLDLIWSGQAMSTETVMSWELEAMNFAGEHSPLTVRDVIERHGGEMW
HHHEEECCCCCEEEEEEEECCCCCCCHHHHHEEHHHHHCCCCCCCCHHHHHHHHCCCHHH
LEREKVRHRAFFRILLPAAMPQEQLDESMLLRADSRPEYYDFDLFKWSERSRALEDRLLT
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHH
ELTYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHG
HHHHHEEECCCCCCCCCCCCCEEEECCEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECC
ITADMLAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRFDQPVLDTLL
CHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHH
LSAVIHPNQDSHRLEAIAERLGITVVGRHTALGDAMVTAEVFLKLVPLLAEKGIRTLREA
HHHHHCCCCCHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAAEKSYYARIKY
HHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9256491 [H]