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The map label for this gene is rpoX [C]

Identifier: 119896794

GI number: 119896794

Start: 540982

End: 541305

Strand: Reverse

Name: rpoX [C]

Synonym: azo0503

Alternate gene names: 119896794

Gene position: 541305-540982 (Counterclockwise)

Preceding gene: 119896795

Following gene: 119896793

Centisome position: 12.37

GC content: 59.88

Gene sequence:

>324_bases
ATGAATCTCAACATCACCGGGCATCACGTCGAAGTCACGCCGGCGATCCGCGAATACGTCGTGACCAAGCTCGATCGCGT
GATCGCGCACTTCGACAACGTCACCAGCGTGAACGTGATTCTCTCGGTGGAAAAACTGAAGCAGAAGGCGGAAGTCACCG
TCCACGTGCGCGGCAAGGACATCTACGTCGAGAGCGACGACGCCAACCTGTACGCGGCGATCGACAGCATGGCCGACAAG
CTCGACCGCCAGGTGCAGAAGTACAAGCAGAAGGTCAGCGACCACAACCACGACGCCCTGAAGCACCAGAGCCCCGAGGC
CTGA

Upstream 100 bases:

>100_bases
AGGGTATCGTGGTCGCCAGGCGGACCATCGCCAAGTATCGCGAATCGCTCAATATCCCGCCGGTCAGTCTGCGCAAAACG
ATCTAAAAAGAGGACTCATC

Downstream 100 bases:

>100_bases
GCTTCCGCGCCATCCTCCGGTGCCGGGTGCGGGTATAATCCGCGCCGTTCCGACGACGCCCGCCCGCATCCGCACCGTCC
TCCCGCTCCCCGCGCCGCCA

Product: sigma-54 modulation protein

Products: NA

Alternate protein names: ORF130 [H]

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MNLNITGHHVEVTPAIREYVVTKLDRVIAHFDNVTSVNVILSVEKLKQKAEVTVHVRGKDIYVESDDANLYAAIDSMADK
LDRQVQKYKQKVSDHNHDALKHQSPEA

Sequences:

>Translated_107_residues
MNLNITGHHVEVTPAIREYVVTKLDRVIAHFDNVTSVNVILSVEKLKQKAEVTVHVRGKDIYVESDDANLYAAIDSMADK
LDRQVQKYKQKVSDHNHDALKHQSPEA
>Mature_107_residues
MNLNITGHHVEVTPAIREYVVTKLDRVIAHFDNVTSVNVILSVEKLKQKAEVTVHVRGKDIYVESDDANLYAAIDSMADK
LDRQVQKYKQKVSDHNHDALKHQSPEA

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=95, Percent_Identity=43.1578947368421, Blast_Score=90, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 12132; Mature: 12132

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNITGHHVEVTPAIREYVVTKLDRVIAHFDNVTSVNVILSVEKLKQKAEVTVHVRGKD
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEHHEEEHHHHHCCCEEEEEECCCE
IYVESDDANLYAAIDSMADKLDRQVQKYKQKVSDHNHDALKHQSPEA
EEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC
>Mature Secondary Structure
MNLNITGHHVEVTPAIREYVVTKLDRVIAHFDNVTSVNVILSVEKLKQKAEVTVHVRGKD
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEHHEEEHHHHHCCCEEEEEECCCE
IYVESDDANLYAAIDSMADKLDRQVQKYKQKVSDHNHDALKHQSPEA
EEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1417413 [H]