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The map label for this gene is exbD1 [H]

Identifier: 119896524

GI number: 119896524

Start: 260085

End: 260513

Strand: Direct

Name: exbD1 [H]

Synonym: azo0233

Alternate gene names: 119896524

Gene position: 260085-260513 (Clockwise)

Preceding gene: 119896523

Following gene: 119896525

Centisome position: 5.94

GC content: 65.97

Gene sequence:

>429_bases
ATGGCCATGAACGTAGGCTCGGCGGACGAAGACGATGGCGTCATGTCGGCGATCAACACCACGCCGCTGGTCGACGTGAT
GCTGGTGCTGCTGATCATCTTCCTGCTCACCATCCCGGTGGCCACCGTCTCGGTGCCGGTCGAGCTGCCCAAGGAAACCA
TCGAGGCGCGCGAGACCAAGCCCGAGAACGTGATCCTGTCGGTGGATAAGGGCGGTGCGCTGTTCTGGCACGACGTCCGC
GTCGCCAACGTCGATGCGCTGGTCGAGCGGCTGAAGAAGGTGTCGGTGCAGCAGCCGCAGCCGGAAGTGCAGATCCGTGG
CGACCTCGATGCCGCCTACGACGGCGTCGGCCGCATCCTCTACGCCTGCCAGCGCGCAGGCATCACCAAGGTCGCCTTCA
TCACCGAGCCGCCGGCTCGCGGTGGCTGA

Upstream 100 bases:

>100_bases
GGCGTGATGGACCAGGTCCGCGGCTTCGGCAACGAACTGCACACCGTCATCCTGTCGTCGGCCAAGCGCGCCTGAGCGCC
GCGCCGGAAGGAGCGCCACC

Downstream 100 bases:

>100_bases
GGGCGGGAGACGCGCATGGGAATGAACGTAGGCAGTGCCGGCGCTTCGAGCGAGCCGGAAGTGATGGTCGACATCAACAC
CACGCCGCTGATCGACGTGA

Product: putative biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MAMNVGSADEDDGVMSAINTTPLVDVMLVLLIIFLLTIPVATVSVPVELPKETIEARETKPENVILSVDKGGALFWHDVR
VANVDALVERLKKVSVQQPQPEVQIRGDLDAAYDGVGRILYACQRAGITKVAFITEPPARGG

Sequences:

>Translated_142_residues
MAMNVGSADEDDGVMSAINTTPLVDVMLVLLIIFLLTIPVATVSVPVELPKETIEARETKPENVILSVDKGGALFWHDVR
VANVDALVERLKKVSVQQPQPEVQIRGDLDAAYDGVGRILYACQRAGITKVAFITEPPARGG
>Mature_141_residues
AMNVGSADEDDGVMSAINTTPLVDVMLVLLIIFLLTIPVATVSVPVELPKETIEARETKPENVILSVDKGGALFWHDVRV
ANVDALVERLKKVSVQQPQPEVQIRGDLDAAYDGVGRILYACQRAGITKVAFITEPPARGG

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=143, Percent_Identity=32.8671328671329, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15279; Mature: 15148

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNVGSADEDDGVMSAINTTPLVDVMLVLLIIFLLTIPVATVSVPVELPKETIEARETK
CCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHCCC
PENVILSVDKGGALFWHDVRVANVDALVERLKKVSVQQPQPEVQIRGDLDAAYDGVGRIL
CCCEEEEECCCCEEEEECEEECCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHH
YACQRAGITKVAFITEPPARGG
HHHHHCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
AMNVGSADEDDGVMSAINTTPLVDVMLVLLIIFLLTIPVATVSVPVELPKETIEARETK
CCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHCCC
PENVILSVDKGGALFWHDVRVANVDALVERLKKVSVQQPQPEVQIRGDLDAAYDGVGRIL
CCCEEEEECCCCEEEEECEEECCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHH
YACQRAGITKVAFITEPPARGG
HHHHHCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]