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The map label for this gene is exbD2 [H]

Identifier: 119896525

GI number: 119896525

Start: 260535

End: 260960

Strand: Direct

Name: exbD2 [H]

Synonym: azo0234

Alternate gene names: 119896525

Gene position: 260535-260960 (Clockwise)

Preceding gene: 119896524

Following gene: 119896526

Centisome position: 5.95

GC content: 65.02

Gene sequence:

>426_bases
ATGAACGTAGGCAGTGCCGGCGCTTCGAGCGAGCCGGAAGTGATGGTCGACATCAACACCACGCCGCTGATCGACGTGAT
GCTGGTGTTGCTGATCATGCTGATCATCACCATCCCGATCCAGCTGCATTCGGTGAATCTCGACCTGCCGGTGGGCACGC
CGCCGGCGAGCGACATCAAGCCGGAGATCGTCAAGATCGACATCGACGACAAGAGCACGGTGTATTGGCAGGGCGTGGCG
CTCGCCGACATGGGCGAGCTGGAGACCAGGCTGCGCGAGATCGCGGCGCGGCCGGTAGCGCCCGACCTCCACCTGCGCCC
CGACAAGGCGGCGCGCTATGCGGTGGTGGCGCGGGTGCTGGCCGACACCAAGCGCTTGGGGCTGACCAAGATCGGCGTCA
TCGGCAGCGAACAGTTCGTGCAGTAG

Upstream 100 bases:

>100_bases
CCGCATCCTCTACGCCTGCCAGCGCGCAGGCATCACCAAGGTCGCCTTCATCACCGAGCCGCCGGCTCGCGGTGGCTGAG
GGCGGGAGACGCGCATGGGA

Downstream 100 bases:

>100_bases
CACGCACGACCAACAGCACGGGCAAGTCATGGATTACAGCTTTCAACCCAAGCAAACCTCGGGGCGCTATGTCGGCATCG
GCATCGTCGTCGGCCTGCAC

Product: putative biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MNVGSAGASSEPEVMVDINTTPLIDVMLVLLIMLIITIPIQLHSVNLDLPVGTPPASDIKPEIVKIDIDDKSTVYWQGVA
LADMGELETRLREIAARPVAPDLHLRPDKAARYAVVARVLADTKRLGLTKIGVIGSEQFVQ

Sequences:

>Translated_141_residues
MNVGSAGASSEPEVMVDINTTPLIDVMLVLLIMLIITIPIQLHSVNLDLPVGTPPASDIKPEIVKIDIDDKSTVYWQGVA
LADMGELETRLREIAARPVAPDLHLRPDKAARYAVVARVLADTKRLGLTKIGVIGSEQFVQ
>Mature_141_residues
MNVGSAGASSEPEVMVDINTTPLIDVMLVLLIMLIITIPIQLHSVNLDLPVGTPPASDIKPEIVKIDIDDKSTVYWQGVA
LADMGELETRLREIAARPVAPDLHLRPDKAARYAVVARVLADTKRLGLTKIGVIGSEQFVQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15246; Mature: 15246

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVGSAGASSEPEVMVDINTTPLIDVMLVLLIMLIITIPIQLHSVNLDLPVGTPPASDIK
CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCC
PEIVKIDIDDKSTVYWQGVALADMGELETRLREIAARPVAPDLHLRPDKAARYAVVARVL
CEEEEEEECCCCEEEECCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
ADTKRLGLTKIGVIGSEQFVQ
HHHHHCCCEEEEECCCHHHCC
>Mature Secondary Structure
MNVGSAGASSEPEVMVDINTTPLIDVMLVLLIMLIITIPIQLHSVNLDLPVGTPPASDIK
CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCC
PEIVKIDIDDKSTVYWQGVALADMGELETRLREIAARPVAPDLHLRPDKAARYAVVARVL
CEEEEEEECCCCEEEECCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
ADTKRLGLTKIGVIGSEQFVQ
HHHHHCCCEEEEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]