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The map label for this gene is rraA [C]

Identifier: 119871171

GI number: 119871171

Start: 5389828

End: 5390307

Strand: Direct

Name: rraA [C]

Synonym: Mkms_5144

Alternate gene names: 119871171

Gene position: 5389828-5390307 (Clockwise)

Preceding gene: 119871170

Following gene: 119871173

Centisome position: 93.94

GC content: 67.71

Gene sequence:

>480_bases
GTGACCATCGAACCGCGCGCCACCGCCGACCTCGTCGACGACATCGGACCCGACGTCCGCAGTTGTGATCTGCAGCTTCG
CCAGTTCGGCAGGCGACCGGAATTCGCCGGGCGGGTCACCACGGTGCGGTGCTTCCAGGACAACGCGCTACTCAAATCGG
TGCTGTCGGAACCCGGCGACGGCGGCGTGCTGGTGATCGACGGCGACGGTTCGCTGCACACCGCGCTGGTCGGCGATGTG
ATCGCAGCGCTGGGCCGCGACAACGGGTGGAGCGGGCTGATCATCAACGGCGCCGTCCGGGATGCCTCGACGCTGCGCAC
CCTCGACATCGGGATCAAGGCCTTGGGCACCAACCCGCGCAAGAGTACGAAAACCGGTGCGGGCGAACGGGATGTCCCCG
TCGATTTCGGCGGCGTGACGTTCACGCCGGGCGACGTCGCCTACAGCGACGACGACGGAATCGTCGTCGTCACGCCGTAG

Upstream 100 bases:

>100_bases
AGATGTACCTGGCCGACGAACGCTTCACCCGCCACTACGACGACCGCGAGCCGGGGCTGGCCCGGTATCTGCACGATGTG
GTCGTCGCTAGCATCGAGCG

Downstream 100 bases:

>100_bases
GTTCTACCCGCCCACTGTGCGGATTCATACGCAACGCGCCGCGGCGCGCGTACGAATCCGCACAGTCGAGCGGATCAGAC
CGTGACCGGCGCCTGGTGCT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MTIEPRATADLVDDIGPDVRSCDLQLRQFGRRPEFAGRVTTVRCFQDNALLKSVLSEPGDGGVLVIDGDGSLHTALVGDV
IAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPRKSTKTGAGERDVPVDFGGVTFTPGDVAYSDDDGIVVVTP

Sequences:

>Translated_159_residues
MTIEPRATADLVDDIGPDVRSCDLQLRQFGRRPEFAGRVTTVRCFQDNALLKSVLSEPGDGGVLVIDGDGSLHTALVGDV
IAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPRKSTKTGAGERDVPVDFGGVTFTPGDVAYSDDDGIVVVTP
>Mature_158_residues
TIEPRATADLVDDIGPDVRSCDLQLRQFGRRPEFAGRVTTVRCFQDNALLKSVLSEPGDGGVLVIDGDGSLHTALVGDVI
AALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPRKSTKTGAGERDVPVDFGGVTFTPGDVAYSDDDGIVVVTP

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=149, Percent_Identity=45.6375838926174, Blast_Score=127, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 16636; Mature: 16505

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIEPRATADLVDDIGPDVRSCDLQLRQFGRRPEFAGRVTTVRCFQDNALLKSVLSEPGD
CCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCC
GGVLVIDGDGSLHTALVGDVIAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPR
CCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCEEEECCCCC
KSTKTGAGERDVPVDFGGVTFTPGDVAYSDDDGIVVVTP
CCCCCCCCCCCCCEECCCEEECCCCEEEECCCCEEEEEC
>Mature Secondary Structure 
TIEPRATADLVDDIGPDVRSCDLQLRQFGRRPEFAGRVTTVRCFQDNALLKSVLSEPGD
CCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCC
GGVLVIDGDGSLHTALVGDVIAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPR
CCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCEEEECCCCC
KSTKTGAGERDVPVDFGGVTFTPGDVAYSDDDGIVVVTP
CCCCCCCCCCCCCEECCCEEECCCCEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA