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The map label for this gene is csp [H]

Identifier: 119868378

GI number: 119868378

Start: 2455087

End: 2455290

Strand: Reverse

Name: csp [H]

Synonym: Mkms_2342

Alternate gene names: 119868378

Gene position: 2455290-2455087 (Counterclockwise)

Preceding gene: 119868380

Following gene: 119868376

Centisome position: 42.8

GC content: 56.86

Gene sequence:

>204_bases
ATGACACAGGGAACCGTTAAATGGTTCAACAGCGAAAAAGGCTTCGGCTTCATCGCTCCCGACGGCGGCTCTGATGACGT
CTTCGTCCACTACTCTGAGATCCAAGGCGGCGGTTTCCGCTCGCTCGAGGAGAATCAGCGGGTCGAATTCGAAATCGGAC
AAGGTGCAAAGGGTCCGCAGGCTACCTCGGTGACCGCGATCTAG

Upstream 100 bases:

>100_bases
GGGGCGGATCCGCCGCGGATTCACCCGGATCGGATTTCCCGTGCTAGCCTCAACGGAGAATGCTTTCTGCATTCGTACGT
AAGTCGAAAGAAATCAAGAT

Downstream 100 bases:

>100_bases
CAGACTTCAACGAATTGTGGGCCGCCGGATTCATCCGGCGGCCCACAGTCGTTTTCAGGGGTTGAACGTCACCGACTCTT
CTGATCCGGTGCGTCCGAGA

Product: cold-shock DNA-binding family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MTQGTVKWFNSEKGFGFIAPDGGSDDVFVHYSEIQGGGFRSLEENQRVEFEIGQGAKGPQATSVTAI

Sequences:

>Translated_67_residues
MTQGTVKWFNSEKGFGFIAPDGGSDDVFVHYSEIQGGGFRSLEENQRVEFEIGQGAKGPQATSVTAI
>Mature_66_residues
TQGTVKWFNSEKGFGFIAPDGGSDDVFVHYSEIQGGGFRSLEENQRVEFEIGQGAKGPQATSVTAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=64.6153846153846, Blast_Score=91, Evalue=1e-20,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=60.9375, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=66.1538461538461, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=62.5, Blast_Score=88, Evalue=9e-20,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=62.5, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=52.2388059701493, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=60.655737704918, Blast_Score=80, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=50.7936507936508, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7212; Mature: 7081

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQGTVKWFNSEKGFGFIAPDGGSDDVFVHYSEIQGGGFRSLEENQRVEFEIGQGAKGPQ
CCCCCEEEECCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCC
ATSVTAI
CEEEEEC
>Mature Secondary Structure 
TQGTVKWFNSEKGFGFIAPDGGSDDVFVHYSEIQGGGFRSLEENQRVEFEIGQGAKGPQ
CCCCEEEECCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCC
ATSVTAI
CEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8655472 [H]