| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776715
Identifier: 119776715
GI number: 119776715
Start: 4217714
End: 4218046
Strand: Direct
Name: 119776715
Synonym: Sama_3583
Alternate gene names: NA
Gene position: 4217714-4218046 (Clockwise)
Preceding gene: 119776713
Following gene: 119776717
Centisome position: 97.95
GC content: 52.55
Gene sequence:
>333_bases ATGCTTACGCTGGAAACGCCGCAACAACTGGCCGAGGCACTGGCGCAACATCCGGGGCTATTACTGTTGATTGGCGGAAA AGACTGCGGCGTATGTCAGGTGCTCAAGCCAAAAATTGCCAGTTTGCTGGTAACTGAGTTCCCTGCCATGACGCTGGCCT ATATCGATTGCCAGGCCTCCGGGGAAGTACTTTGTGGGCAGATTGGGGTGTTCTCACTGCCGGTTGTGAGAGTGTTTTTC CATGGGGACAGTTTTGGTGAGTTGACGCGGGTGTTTTCTATGGCCGATATCAAAAACTTGCTCGAGCGGCCCTATTCCCT GTGTTTTAACTGA
Upstream 100 bases:
>100_bases CGGAGGGATACCGTCGGTTAAAAGTGTCAAATTGCATCCAAGCCGGCTTACGAAAACTGTGGCAAAATGTGCCATCACAC TCAGATTGAGAGACTTTGAC
Downstream 100 bases:
>100_bases CGACTTTTTCTGTCACCACCGGGCCATGGGAGAGTCACGGCTCCGGCGGCATAAGCAGATTTCATAACGCTTAATCCCTC GCGCTCAAGCGCACGCCATC
Product: thioredoxin domain-containing protein
Products: NA
Alternate protein names: Thiol-Disulfide Isomerase And Thioredoxins
Number of amino acids: Translated: 110; Mature: 110
Protein sequence:
>110_residues MLTLETPQQLAEALAQHPGLLLLIGGKDCGVCQVLKPKIASLLVTEFPAMTLAYIDCQASGEVLCGQIGVFSLPVVRVFF HGDSFGELTRVFSMADIKNLLERPYSLCFN
Sequences:
>Translated_110_residues MLTLETPQQLAEALAQHPGLLLLIGGKDCGVCQVLKPKIASLLVTEFPAMTLAYIDCQASGEVLCGQIGVFSLPVVRVFF HGDSFGELTRVFSMADIKNLLERPYSLCFN >Mature_110_residues MLTLETPQQLAEALAQHPGLLLLIGGKDCGVCQVLKPKIASLLVTEFPAMTLAYIDCQASGEVLCGQIGVFSLPVVRVFF HGDSFGELTRVFSMADIKNLLERPYSLCFN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11959; Mature: 11959
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLETPQQLAEALAQHPGLLLLIGGKDCGVCQVLKPKIASLLVTEFPAMTLAYIDCQAS CCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC GEVLCGQIGVFSLPVVRVFFHGDSFGELTRVFSMADIKNLLERPYSLCFN CCEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLTLETPQQLAEALAQHPGLLLLIGGKDCGVCQVLKPKIASLLVTEFPAMTLAYIDCQAS CCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC GEVLCGQIGVFSLPVVRVFFHGDSFGELTRVFSMADIKNLLERPYSLCFN CCEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA