Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776715

Identifier: 119776715

GI number: 119776715

Start: 4217714

End: 4218046

Strand: Direct

Name: 119776715

Synonym: Sama_3583

Alternate gene names: NA

Gene position: 4217714-4218046 (Clockwise)

Preceding gene: 119776713

Following gene: 119776717

Centisome position: 97.95

GC content: 52.55

Gene sequence:

>333_bases
ATGCTTACGCTGGAAACGCCGCAACAACTGGCCGAGGCACTGGCGCAACATCCGGGGCTATTACTGTTGATTGGCGGAAA
AGACTGCGGCGTATGTCAGGTGCTCAAGCCAAAAATTGCCAGTTTGCTGGTAACTGAGTTCCCTGCCATGACGCTGGCCT
ATATCGATTGCCAGGCCTCCGGGGAAGTACTTTGTGGGCAGATTGGGGTGTTCTCACTGCCGGTTGTGAGAGTGTTTTTC
CATGGGGACAGTTTTGGTGAGTTGACGCGGGTGTTTTCTATGGCCGATATCAAAAACTTGCTCGAGCGGCCCTATTCCCT
GTGTTTTAACTGA

Upstream 100 bases:

>100_bases
CGGAGGGATACCGTCGGTTAAAAGTGTCAAATTGCATCCAAGCCGGCTTACGAAAACTGTGGCAAAATGTGCCATCACAC
TCAGATTGAGAGACTTTGAC

Downstream 100 bases:

>100_bases
CGACTTTTTCTGTCACCACCGGGCCATGGGAGAGTCACGGCTCCGGCGGCATAAGCAGATTTCATAACGCTTAATCCCTC
GCGCTCAAGCGCACGCCATC

Product: thioredoxin domain-containing protein

Products: NA

Alternate protein names: Thiol-Disulfide Isomerase And Thioredoxins

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MLTLETPQQLAEALAQHPGLLLLIGGKDCGVCQVLKPKIASLLVTEFPAMTLAYIDCQASGEVLCGQIGVFSLPVVRVFF
HGDSFGELTRVFSMADIKNLLERPYSLCFN

Sequences:

>Translated_110_residues
MLTLETPQQLAEALAQHPGLLLLIGGKDCGVCQVLKPKIASLLVTEFPAMTLAYIDCQASGEVLCGQIGVFSLPVVRVFF
HGDSFGELTRVFSMADIKNLLERPYSLCFN
>Mature_110_residues
MLTLETPQQLAEALAQHPGLLLLIGGKDCGVCQVLKPKIASLLVTEFPAMTLAYIDCQASGEVLCGQIGVFSLPVVRVFF
HGDSFGELTRVFSMADIKNLLERPYSLCFN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11959; Mature: 11959

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLETPQQLAEALAQHPGLLLLIGGKDCGVCQVLKPKIASLLVTEFPAMTLAYIDCQAS
CCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
GEVLCGQIGVFSLPVVRVFFHGDSFGELTRVFSMADIKNLLERPYSLCFN
CCEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLTLETPQQLAEALAQHPGLLLLIGGKDCGVCQVLKPKIASLLVTEFPAMTLAYIDCQAS
CCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
GEVLCGQIGVFSLPVVRVFFHGDSFGELTRVFSMADIKNLLERPYSLCFN
CCEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA