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The map label for this gene is cph2 [H]

Identifier: 119776713

GI number: 119776713

Start: 4216162

End: 4217100

Strand: Direct

Name: cph2 [H]

Synonym: Sama_3581

Alternate gene names: 119776713

Gene position: 4216162-4217100 (Clockwise)

Preceding gene: 119776712

Following gene: 119776715

Centisome position: 97.91

GC content: 52.82

Gene sequence:

>939_bases
ATGAATGATGCCGCTCTGCTTGAAACAACCACCTTTGCCGACAGCGCCCTGTGCCTGCAGGCACTGCTGAATTCGGTTGA
AGATCAGGTGGTTGTCATCGACATCCAGGGCACCATAGTCTACACCAACCTTGCCTGGAACAAGTTTGCCGAAGAGAACG
GCATGACACCGGGATACAACTGGCTTGGTACCAACTACTTGCGGGTTTGCGATGGTGCGGCCGAGTCATTCAGCAAAACA
GCCGCCGAAGGTATCAGGCAGGTGATGGCAGGTGCAGAAGCGCAGTTTTACCTTGAATACCCCTGTCACAGTCCCACAAC
CCAACGTTGGTTTATGATGCGGGTCACCGAAATTGCCGGTCTGGAATCGCGCTATTTTGCCATTGCCCATGTCAATATCA
CCGAGCGGAAGCTGTTGGAACTGAAGGTTGCCAAGCTGTCGATGCATGACCCGCTGACCGGCCTCGCCAATCGGCGTTTA
TTCAACAGCTTTTTACACAACGAATGGCGCAGAAGCCAACGGGAACAGGTCCCACTCACCCTGATTTTACTGGATTTGGA
CCACTTCAAATCCTGCAATGATCATTTTGGCCATCTGGTGGGAGATGAGCATTTACAGCAGGTCAGTCAGGTGCTCTTGT
CGGTATGTCAACGCCCCACAGATCTGGCCTGCCGTTTTGGTGGTGATGAGTTTGCACTGGTGCTTGGCAATACAAACGCT
GCCGCGGGGCTCGGGCTTGCCGAAAAGGTGCGCAGTACAATCGAAAACCTGAATATCAAAATAGAAGATGGGCTGCGTCT
AACGTCGAGTCTCGGTATAGCGACCCTGGAGCCGGGGCAGCAAATGGAACAGGAAAACACACTCTGTTCCTTGGCAGATT
CTGCGCTCTATCAGGCCAAAGCGGCAGGAAAGAATTGCTGCAAGCAACTGTCCTGCTAA

Upstream 100 bases:

>100_bases
ACTCGAACATGGCAAAATTCGACTTTATACAACGCCAGGTGGCCGGTGTTCATTCACACTCGGCCGCTTGTTTACTGTTA
CGGCCGCCGGGGAAGATTGA

Downstream 100 bases:

>100_bases
CCGCCTGCGGTTGGCGGTCTAGTCTTCAGCGGCCTGCGTATCCAGCGCCAGCAAGGCTTTATCCTGTTCCCTGTTTAGGG
GATAGATAGTCTTTATCCGG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MNDAALLETTTFADSALCLQALLNSVEDQVVVIDIQGTIVYTNLAWNKFAEENGMTPGYNWLGTNYLRVCDGAAESFSKT
AAEGIRQVMAGAEAQFYLEYPCHSPTTQRWFMMRVTEIAGLESRYFAIAHVNITERKLLELKVAKLSMHDPLTGLANRRL
FNSFLHNEWRRSQREQVPLTLILLDLDHFKSCNDHFGHLVGDEHLQQVSQVLLSVCQRPTDLACRFGGDEFALVLGNTNA
AAGLGLAEKVRSTIENLNIKIEDGLRLTSSLGIATLEPGQQMEQENTLCSLADSALYQAKAAGKNCCKQLSC

Sequences:

>Translated_312_residues
MNDAALLETTTFADSALCLQALLNSVEDQVVVIDIQGTIVYTNLAWNKFAEENGMTPGYNWLGTNYLRVCDGAAESFSKT
AAEGIRQVMAGAEAQFYLEYPCHSPTTQRWFMMRVTEIAGLESRYFAIAHVNITERKLLELKVAKLSMHDPLTGLANRRL
FNSFLHNEWRRSQREQVPLTLILLDLDHFKSCNDHFGHLVGDEHLQQVSQVLLSVCQRPTDLACRFGGDEFALVLGNTNA
AAGLGLAEKVRSTIENLNIKIEDGLRLTSSLGIATLEPGQQMEQENTLCSLADSALYQAKAAGKNCCKQLSC
>Mature_312_residues
MNDAALLETTTFADSALCLQALLNSVEDQVVVIDIQGTIVYTNLAWNKFAEENGMTPGYNWLGTNYLRVCDGAAESFSKT
AAEGIRQVMAGAEAQFYLEYPCHSPTTQRWFMMRVTEIAGLESRYFAIAHVNITERKLLELKVAKLSMHDPLTGLANRRL
FNSFLHNEWRRSQREQVPLTLILLDLDHFKSCNDHFGHLVGDEHLQQVSQVLLSVCQRPTDLACRFGGDEFALVLGNTNA
AAGLGLAEKVRSTIENLNIKIEDGLRLTSSLGIATLEPGQQMEQENTLCSLADSALYQAKAAGKNCCKQLSC

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=37.3563218390805, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=36.6459627329193, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=37.9888268156425, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787262, Length=205, Percent_Identity=30.2439024390244, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=36.4779874213836, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787541, Length=203, Percent_Identity=30.5418719211823, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=30.4597701149425, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=29.5454545454545, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788956, Length=213, Percent_Identity=31.4553990610329, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=30.4347826086957, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=199, Percent_Identity=27.6381909547739, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787056, Length=127, Percent_Identity=37.007874015748, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=155, Percent_Identity=32.9032258064516, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 34565; Mature: 34565

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDAALLETTTFADSALCLQALLNSVEDQVVVIDIQGTIVYTNLAWNKFAEENGMTPGYN
CCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECHHHHHHHHCCCCCCCC
WLGTNYLRVCDGAAESFSKTAAEGIRQVMAGAEAQFYLEYPCHSPTTQRWFMMRVTEIAG
CCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHC
LESRYFAIAHVNITERKLLELKVAKLSMHDPLTGLANRRLFNSFLHNEWRRSQREQVPLT
CCCCEEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LILLDLDHFKSCNDHFGHLVGDEHLQQVSQVLLSVCQRPTDLACRFGGDEFALVLGNTNA
EEEEECHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHEEEECCCEEEEEEECCCC
AAGLGLAEKVRSTIENLNIKIEDGLRLTSSLGIATLEPGQQMEQENTLCSLADSALYQAK
HHCCCHHHHHHHHHHHCCEEECCCCEEHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
AAGKNCCKQLSC
HHHHHHHHHCCC
>Mature Secondary Structure
MNDAALLETTTFADSALCLQALLNSVEDQVVVIDIQGTIVYTNLAWNKFAEENGMTPGYN
CCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECHHHHHHHHCCCCCCCC
WLGTNYLRVCDGAAESFSKTAAEGIRQVMAGAEAQFYLEYPCHSPTTQRWFMMRVTEIAG
CCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHC
LESRYFAIAHVNITERKLLELKVAKLSMHDPLTGLANRRLFNSFLHNEWRRSQREQVPLT
CCCCEEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LILLDLDHFKSCNDHFGHLVGDEHLQQVSQVLLSVCQRPTDLACRFGGDEFALVLGNTNA
EEEEECHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHEEEECCCEEEEEEECCCC
AAGLGLAEKVRSTIENLNIKIEDGLRLTSSLGIATLEPGQQMEQENTLCSLADSALYQAK
HHCCCHHHHHHHHHHHCCEEECCCCEEHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
AAGKNCCKQLSC
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]