Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776717

Identifier: 119776717

GI number: 119776717

Start: 4218654

End: 4218965

Strand: Direct

Name: 119776717

Synonym: Sama_3585

Alternate gene names: NA

Gene position: 4218654-4218965 (Clockwise)

Preceding gene: 119776715

Following gene: 119776723

Centisome position: 97.97

GC content: 51.92

Gene sequence:

>312_bases
TTGATAGTTGGCGATTCAATACCATATCAACGCCATAAGGACATATTGCCGACTGCCGACAGGAAATTGCCTATGGATGA
GCAGCCACTCATTGGCTTTGTCATACTGGTGCTGGCGGTACTTCCATGGCTGATGTGGCGCCTGTACCGCTGGGCGAGAA
ACATGCCCAGGGGAGCCTATCTCTTTCTGGCATTCTTTCCGCTGATATCGCTTGTTCCCATCCCCACCGAATCCCTGAAA
CAGCTCGATGCGGCCAAACAGGAACAGCGCAAAAACAAGGCATCTCCCAGCGGCGATGATGAAAAAGACTGA

Upstream 100 bases:

>100_bases
AACGCCGGACACTCACGCTGGCTGTCCGTTCACCCATCGCGGACACTCAAGGCTGTCCGTCCGGACAGGCGGACACTGCA
ACTGACCGCACCATCTACAC

Downstream 100 bases:

>100_bases
CATCTAAAAGAAAAAACCGCCCCAGGGCGGTTTTAAGTATCTGTTGTTATCAGGCCCTGGATGTCAACGCCGTCAACTGG
CGGTCATGCCACCGGCTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MIVGDSIPYQRHKDILPTADRKLPMDEQPLIGFVILVLAVLPWLMWRLYRWARNMPRGAYLFLAFFPLISLVPIPTESLK
QLDAAKQEQRKNKASPSGDDEKD

Sequences:

>Translated_103_residues
MIVGDSIPYQRHKDILPTADRKLPMDEQPLIGFVILVLAVLPWLMWRLYRWARNMPRGAYLFLAFFPLISLVPIPTESLK
QLDAAKQEQRKNKASPSGDDEKD
>Mature_103_residues
MIVGDSIPYQRHKDILPTADRKLPMDEQPLIGFVILVLAVLPWLMWRLYRWARNMPRGAYLFLAFFPLISLVPIPTESLK
QLDAAKQEQRKNKASPSGDDEKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11891; Mature: 11891

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVGDSIPYQRHKDILPTADRKLPMDEQPLIGFVILVLAVLPWLMWRLYRWARNMPRGAY
CCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LFLAFFPLISLVPIPTESLKQLDAAKQEQRKNKASPSGDDEKD
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MIVGDSIPYQRHKDILPTADRKLPMDEQPLIGFVILVLAVLPWLMWRLYRWARNMPRGAY
CCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LFLAFFPLISLVPIPTESLKQLDAAKQEQRKNKASPSGDDEKD
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA