Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776693

Identifier: 119776693

GI number: 119776693

Start: 4196242

End: 4197258

Strand: Direct

Name: 119776693

Synonym: Sama_3561

Alternate gene names: NA

Gene position: 4196242-4197258 (Clockwise)

Preceding gene: 119776692

Following gene: 119776694

Centisome position: 97.45

GC content: 52.9

Gene sequence:

>1017_bases
ATGAACATGCTCTCATTTCTGTTCGGTGCGCCCATCAGGGCGCAGCGGGCAGCCACAGGGCTTAAGGCACACAGAGACGA
TCTGCCCCGCCTGCAGGCCTATTACGATGCCGAAATCGCCCCCCTCAGCCGTAAATTTGAAAACCAACGCATCAGGGCGC
TGAAACAAGCACGGCAACGCATCTATCTTGGGCTGGGTGTATTCGTTGCACTGCTCATCGCCTCTCTGCCGCTGATAAAA
CCCGGCGCCCAGTTTGTGCCCTTCAGCTGGATTGCTGCCGCAGGCATCGCCTTTTTAATCTGGCGCTGGGCCAGCTCGCC
GATGCGCCAATATACCGGGGCGGTACAAAGTGAAATTTACCCGAGGATATTTCGGTTTTTCGGCCCTGACTTTGTGTTCG
CCAAGGGGCAGGACATGGGGATCCGTATGTTTAAAGAGGCCAAAATTTTGCCCTCTTATGACAAGGCCCGCTTCGATGAC
TGTGTGCTTGGCAGCTATCTGGGGGTCAGCATCGGCATCAACGAAGTGCATTTGCTGAGGGAACAAAGGGACAAGGATAA
AAACCGAGACGTGACTGTGTTTCGCGGCTTATTTATCTCACTCTCCAGTCACAAAGCCTTCAGGGGCCATACGGTGGCCA
TTCGCTCCCGGGGTTCTTTGACCAATTTTTTCTCTGACAGCCATGGCGGACTGGAACGGGTGCACCTGGAAGACCCGCAG
TTTGAAAAAATGTTCGATGTGTTTTCAACGGATCAGATTGAAGCACGGGTGCTGTTGACCACCGCCTTTATGGAACGACT
TATGGCACTGGCGCAGTTTTTCTCCAGCCGGATCCAGTGTGCATTCCACCGTGATCGCCTGCTTATCACCATAGAGAGCA
GCCAAAACCGCTTCGAGCAGTCGTCTATTTTCAGCGCCGCCACCTTTGAAGACGAATTCAGCCGGATCCACGGCGAAATG
AAGCAACTCTTTGCTATCATAGAATTACTTAAGCTTAACGAGTACACAGGTCTCTAA

Upstream 100 bases:

>100_bases
CTGATTGCCAACATGGCATCGGTTAAAGCCATGCCGTTTTTTGAAGCTCAGGAAGCCGACAGGGCACCGGTAAACGCCAG
CGACTACCTGAAGTAACCCT

Downstream 100 bases:

>100_bases
TGTCATTTCGCTGGTCGCTGTTTTCCCTGCTTTTAGTTGCTATCGCCGGCACCAGCGCCGGTGCTTCTGATACTCAGTCA
TCCAGCGCAGAGAAGCCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MNMLSFLFGAPIRAQRAATGLKAHRDDLPRLQAYYDAEIAPLSRKFENQRIRALKQARQRIYLGLGVFVALLIASLPLIK
PGAQFVPFSWIAAAGIAFLIWRWASSPMRQYTGAVQSEIYPRIFRFFGPDFVFAKGQDMGIRMFKEAKILPSYDKARFDD
CVLGSYLGVSIGINEVHLLREQRDKDKNRDVTVFRGLFISLSSHKAFRGHTVAIRSRGSLTNFFSDSHGGLERVHLEDPQ
FEKMFDVFSTDQIEARVLLTTAFMERLMALAQFFSSRIQCAFHRDRLLITIESSQNRFEQSSIFSAATFEDEFSRIHGEM
KQLFAIIELLKLNEYTGL

Sequences:

>Translated_338_residues
MNMLSFLFGAPIRAQRAATGLKAHRDDLPRLQAYYDAEIAPLSRKFENQRIRALKQARQRIYLGLGVFVALLIASLPLIK
PGAQFVPFSWIAAAGIAFLIWRWASSPMRQYTGAVQSEIYPRIFRFFGPDFVFAKGQDMGIRMFKEAKILPSYDKARFDD
CVLGSYLGVSIGINEVHLLREQRDKDKNRDVTVFRGLFISLSSHKAFRGHTVAIRSRGSLTNFFSDSHGGLERVHLEDPQ
FEKMFDVFSTDQIEARVLLTTAFMERLMALAQFFSSRIQCAFHRDRLLITIESSQNRFEQSSIFSAATFEDEFSRIHGEM
KQLFAIIELLKLNEYTGL
>Mature_338_residues
MNMLSFLFGAPIRAQRAATGLKAHRDDLPRLQAYYDAEIAPLSRKFENQRIRALKQARQRIYLGLGVFVALLIASLPLIK
PGAQFVPFSWIAAAGIAFLIWRWASSPMRQYTGAVQSEIYPRIFRFFGPDFVFAKGQDMGIRMFKEAKILPSYDKARFDD
CVLGSYLGVSIGINEVHLLREQRDKDKNRDVTVFRGLFISLSSHKAFRGHTVAIRSRGSLTNFFSDSHGGLERVHLEDPQ
FEKMFDVFSTDQIEARVLLTTAFMERLMALAQFFSSRIQCAFHRDRLLITIESSQNRFEQSSIFSAATFEDEFSRIHGEM
KQLFAIIELLKLNEYTGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38704; Mature: 38704

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMLSFLFGAPIRAQRAATGLKAHRDDLPRLQAYYDAEIAPLSRKFENQRIRALKQARQR
CCHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IYLGLGVFVALLIASLPLIKPGAQFVPFSWIAAAGIAFLIWRWASSPMRQYTGAVQSEIY
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
PRIFRFFGPDFVFAKGQDMGIRMFKEAKILPSYDKARFDDCVLGSYLGVSIGINEVHLLR
HHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHCEECCCHHHHHHH
EQRDKDKNRDVTVFRGLFISLSSHKAFRGHTVAIRSRGSLTNFFSDSHGGLERVHLEDPQ
HHHCCCCCCCEEEEHHHHHEECCCCCCCCCEEEEECCCCHHHHHCCCCCCCEEEECCCCH
FEKMFDVFSTDQIEARVLLTTAFMERLMALAQFFSSRIQCAFHRDRLLITIESSQNRFEQ
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEEECCCCHHHH
SSIFSAATFEDEFSRIHGEMKQLFAIIELLKLNEYTGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNMLSFLFGAPIRAQRAATGLKAHRDDLPRLQAYYDAEIAPLSRKFENQRIRALKQARQR
CCHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IYLGLGVFVALLIASLPLIKPGAQFVPFSWIAAAGIAFLIWRWASSPMRQYTGAVQSEIY
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
PRIFRFFGPDFVFAKGQDMGIRMFKEAKILPSYDKARFDDCVLGSYLGVSIGINEVHLLR
HHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHCEECCCHHHHHHH
EQRDKDKNRDVTVFRGLFISLSSHKAFRGHTVAIRSRGSLTNFFSDSHGGLERVHLEDPQ
HHHCCCCCCCEEEEHHHHHEECCCCCCCCCEEEEECCCCHHHHHCCCCCCCEEEECCCCH
FEKMFDVFSTDQIEARVLLTTAFMERLMALAQFFSSRIQCAFHRDRLLITIESSQNRFEQ
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEEECCCCHHHH
SSIFSAATFEDEFSRIHGEMKQLFAIIELLKLNEYTGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA