| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776676
Identifier: 119776676
GI number: 119776676
Start: 4176165
End: 4176770
Strand: Reverse
Name: 119776676
Synonym: Sama_3544
Alternate gene names: NA
Gene position: 4176770-4176165 (Counterclockwise)
Preceding gene: 119776677
Following gene: 119776675
Centisome position: 97.0
GC content: 58.25
Gene sequence:
>606_bases ATGTCACCTCTCAACCGCCTTTCATTTTGGTTTATGCCATGGCTGCTGGTCACCTTATGGGTGGGCGCGCCTTCAACCCT GCTTGCCCGCCACGTCGTGGACGAAGGCGCCAGCGAATATGAATCCCTTATCAAGGCCACACCAGCGGCGCCGGAAGAGT CTGTACCGGGTCAGTCTGCTGCCGACACTCAGGTGCTGAATAATCAAAGCTTGCTCAGGCCGCGCCAACAGAGCAGAGAA ACGGCCCTCGACAGTGAAGGGCGTCCGCTTGCCATACCCACAGAGGTCAAGCCTGCCATGGAATTTGGGCCCGAATCCCG TGACTGGCAGTGGGAAGGTAGCAGGGATAAACCGGTTTCCACAGACAAACGCAGCAAGGTATCCAAAACGTCATCGGACA AAGGTCGTGGTAAGGTTGCCAACGATCCTAACTGCCGCTGGCTGGATACCCGGATTTCGCAGCTGGAAGACTTACTTGCT TCCAGTGGCGGCGGTGCCCACCATCAGGATGAACTGAAGGCGAGAATGGGAGAGTGGCGTTGCCTCAAGTGCGGCGCCGA CGGCCCAAAGCAAGGTGACCACTCGCGCTGCCAATACCGCCGCTGA
Upstream 100 bases:
>100_bases CTACACTTGTGAAACACAGATGGGGCCGGATTGCCCCATGGTTGCAGACAGATGCCGCAGGTAAACGTCAGCGCCTGCAT CACCAACAGGAGGACAGGGA
Downstream 100 bases:
>100_bases GCCCTCTGTGAGCCCCAGTCCTGTGACAAACTGACTCACAGGCCGGTCTTTGCTCTGGTCTAGGTGCAAAAAGCTCCCTA CAATTGAGCCTTTGCCGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MSPLNRLSFWFMPWLLVTLWVGAPSTLLARHVVDEGASEYESLIKATPAAPEESVPGQSAADTQVLNNQSLLRPRQQSRE TALDSEGRPLAIPTEVKPAMEFGPESRDWQWEGSRDKPVSTDKRSKVSKTSSDKGRGKVANDPNCRWLDTRISQLEDLLA SSGGGAHHQDELKARMGEWRCLKCGADGPKQGDHSRCQYRR
Sequences:
>Translated_201_residues MSPLNRLSFWFMPWLLVTLWVGAPSTLLARHVVDEGASEYESLIKATPAAPEESVPGQSAADTQVLNNQSLLRPRQQSRE TALDSEGRPLAIPTEVKPAMEFGPESRDWQWEGSRDKPVSTDKRSKVSKTSSDKGRGKVANDPNCRWLDTRISQLEDLLA SSGGGAHHQDELKARMGEWRCLKCGADGPKQGDHSRCQYRR >Mature_200_residues SPLNRLSFWFMPWLLVTLWVGAPSTLLARHVVDEGASEYESLIKATPAAPEESVPGQSAADTQVLNNQSLLRPRQQSRET ALDSEGRPLAIPTEVKPAMEFGPESRDWQWEGSRDKPVSTDKRSKVSKTSSDKGRGKVANDPNCRWLDTRISQLEDLLAS SGGGAHHQDELKARMGEWRCLKCGADGPKQGDHSRCQYRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22368; Mature: 22237
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPLNRLSFWFMPWLLVTLWVGAPSTLLARHVVDEGASEYESLIKATPAAPEESVPGQSA CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC ADTQVLNNQSLLRPRQQSRETALDSEGRPLAIPTEVKPAMEFGPESRDWQWEGSRDKPVS CHHHHHCCHHHHCCHHHHHHHHCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCCCCCCCC TDKRSKVSKTSSDKGRGKVANDPNCRWLDTRISQLEDLLASSGGGAHHQDELKARMGEWR CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCE CLKCGADGPKQGDHSRCQYRR EEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure SPLNRLSFWFMPWLLVTLWVGAPSTLLARHVVDEGASEYESLIKATPAAPEESVPGQSA CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC ADTQVLNNQSLLRPRQQSRETALDSEGRPLAIPTEVKPAMEFGPESRDWQWEGSRDKPVS CHHHHHCCHHHHCCHHHHHHHHCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCCCCCCCC TDKRSKVSKTSSDKGRGKVANDPNCRWLDTRISQLEDLLASSGGGAHHQDELKARMGEWR CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCE CLKCGADGPKQGDHSRCQYRR EEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA