| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is gor [H]
Identifier: 119776675
GI number: 119776675
Start: 4174690
End: 4176045
Strand: Reverse
Name: gor [H]
Synonym: Sama_3543
Alternate gene names: 119776675
Gene position: 4176045-4174690 (Counterclockwise)
Preceding gene: 119776676
Following gene: 119776674
Centisome position: 96.98
GC content: 55.97
Gene sequence:
>1356_bases ATGGCCCAACACTACGATTACATCTGCCTGGGCGCAGGCAGTGGCGGTATTGCGTCCGCCAATCGCGCCGCCATCCGTGG CGCCAAGGTTTTATTGATTGAAGCCAAGCATGTCGGCGGTACCTGCGTAAACGTTGGCTGTGTGCCGAAAAAAGTGATGT GGTACGGTGCTCAGGTTGCCGAGGCCATGCATCTTTACGCCAAAGACTATGGCTTTGATGTGGATGTGAAAAACTTCGAC TGGAACACTCTGGTAGCCAGCCGTGAAGCCTATATTGACCGTGTACATGCCGCCTATGGCCGTGGCTTCGCCAGCAACGG CGTTACCCTGGTGGAAGGCTATGGTAAGTTTAAGAATAACAACACCATAGAAGTAAACGGTGAAGAATACACGGCCGATC ATATTCTGATTGCCACCGGTGGCCGCCCAAGCATCCCCAATATTCCGGGCGCAGAGCATGGTATTGACTCCAATGGCTTT TTTGCCCTGTCCGAACAGCCCAAGCGGGTTGTGGTGGTGGGCGCCGGTTATATTGCAGTGGAGATTGCCGGTGTGCTGCA TGCCCTTGGCAGCGAAACCCACCTGTGTGTGCGTAAGCACTCACCGCTGCGTAGCTTCGACCCCATGCTGAGTCAGGCGC TCACAGATGCCATGGCCGAAAATGGCCCCACTCTGCATACCAATGCCGTACCCAAGGCGGTGGAAAAAAATGCCGATGGC AGTCTGACGCTGCAGCTCGAAAACGGCGAATCCATTACCGTGGACTGCCTGATTTGGGCCATCGGCCGTGAGCCTGCCAC CGATAAAATCGGTCTGGAAAATACAGATGTAACCCTGGACGACAAGGGTTACGTCATAGTGGATGAATGGCAGCAAACCA GCGCCAAAGGTATCTACTGCGTCGGCGATATCATGGCTGGCGGTATTGAACTTACGCCAGTGGCCGTGAAAGCCGGACGT TTCCTGTCTGAGCGCCTCTTTGGCGGCCAGCCCAATGCCAAAATGGACTACAGCCTGGTGCCAACCGTGGTATTCAGCCA CCCCCCCATAGGCACCATGGGTCTGAGTGAGCCCGATGCCAAGGCGCAGTACGGCGAGGATCAGGTGAAGGTGTACACCT CGACCTTCACCTCCATGTACACCGCCGTGACCGCGCATCGCCAACCCTGCAAAATGAAGCTGGTGTGCGCCGGTCCGGAC GAAAAAGTTGTGGGTATCCACGGTATTGGCTTTGGGATGGATGAAATCCTCCAGGGCTTTGGCGTGGCAATCAAGATGGG GGCCACCAAGGCCGACTTCGATGCCGTGGTAGCTATCCATCCCACCGGCGCCGAAGAGTTTGTTACTATGCGCTGA
Upstream 100 bases:
>100_bases CCTGTGACAAACTGACTCACAGGCCGGTCTTTGCTCTGGTCTAGGTGCAAAAAGCTCCCTACAATTGAGCCTTTGCCGGT CGTTCACAACGGAGAGTTAC
Downstream 100 bases:
>100_bases AATTAAAAAGCCGCTCAATGAGCGGCTTTTTTCTGTCTTATGGTTAACTTGTGCGCTCGACACACTGCCACTATTTGCCT CAGCAAGGAACCCCAGAGAT
Product: glutathione reductase
Products: NA
Alternate protein names: GR; GRase [H]
Number of amino acids: Translated: 451; Mature: 450
Protein sequence:
>451_residues MAQHYDYICLGAGSGGIASANRAAIRGAKVLLIEAKHVGGTCVNVGCVPKKVMWYGAQVAEAMHLYAKDYGFDVDVKNFD WNTLVASREAYIDRVHAAYGRGFASNGVTLVEGYGKFKNNNTIEVNGEEYTADHILIATGGRPSIPNIPGAEHGIDSNGF FALSEQPKRVVVVGAGYIAVEIAGVLHALGSETHLCVRKHSPLRSFDPMLSQALTDAMAENGPTLHTNAVPKAVEKNADG SLTLQLENGESITVDCLIWAIGREPATDKIGLENTDVTLDDKGYVIVDEWQQTSAKGIYCVGDIMAGGIELTPVAVKAGR FLSERLFGGQPNAKMDYSLVPTVVFSHPPIGTMGLSEPDAKAQYGEDQVKVYTSTFTSMYTAVTAHRQPCKMKLVCAGPD EKVVGIHGIGFGMDEILQGFGVAIKMGATKADFDAVVAIHPTGAEEFVTMR
Sequences:
>Translated_451_residues MAQHYDYICLGAGSGGIASANRAAIRGAKVLLIEAKHVGGTCVNVGCVPKKVMWYGAQVAEAMHLYAKDYGFDVDVKNFD WNTLVASREAYIDRVHAAYGRGFASNGVTLVEGYGKFKNNNTIEVNGEEYTADHILIATGGRPSIPNIPGAEHGIDSNGF FALSEQPKRVVVVGAGYIAVEIAGVLHALGSETHLCVRKHSPLRSFDPMLSQALTDAMAENGPTLHTNAVPKAVEKNADG SLTLQLENGESITVDCLIWAIGREPATDKIGLENTDVTLDDKGYVIVDEWQQTSAKGIYCVGDIMAGGIELTPVAVKAGR FLSERLFGGQPNAKMDYSLVPTVVFSHPPIGTMGLSEPDAKAQYGEDQVKVYTSTFTSMYTAVTAHRQPCKMKLVCAGPD EKVVGIHGIGFGMDEILQGFGVAIKMGATKADFDAVVAIHPTGAEEFVTMR >Mature_450_residues AQHYDYICLGAGSGGIASANRAAIRGAKVLLIEAKHVGGTCVNVGCVPKKVMWYGAQVAEAMHLYAKDYGFDVDVKNFDW NTLVASREAYIDRVHAAYGRGFASNGVTLVEGYGKFKNNNTIEVNGEEYTADHILIATGGRPSIPNIPGAEHGIDSNGFF ALSEQPKRVVVVGAGYIAVEIAGVLHALGSETHLCVRKHSPLRSFDPMLSQALTDAMAENGPTLHTNAVPKAVEKNADGS LTLQLENGESITVDCLIWAIGREPATDKIGLENTDVTLDDKGYVIVDEWQQTSAKGIYCVGDIMAGGIELTPVAVKAGRF LSERLFGGQPNAKMDYSLVPTVVFSHPPIGTMGLSEPDAKAQYGEDQVKVYTSTFTSMYTAVTAHRQPCKMKLVCAGPDE KVVGIHGIGFGMDEILQGFGVAIKMGATKADFDAVVAIHPTGAEEFVTMR
Specific function: Maintains high levels of reduced glutathione in the cytosol [H]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI50301238, Length=460, Percent_Identity=51.304347826087, Blast_Score=440, Evalue=1e-123, Organism=Homo sapiens, GI22035672, Length=474, Percent_Identity=36.7088607594937, Blast_Score=256, Evalue=4e-68, Organism=Homo sapiens, GI148277065, Length=432, Percent_Identity=37.037037037037, Blast_Score=251, Evalue=8e-67, Organism=Homo sapiens, GI33519430, Length=432, Percent_Identity=37.037037037037, Blast_Score=251, Evalue=9e-67, Organism=Homo sapiens, GI33519428, Length=432, Percent_Identity=37.037037037037, Blast_Score=251, Evalue=9e-67, Organism=Homo sapiens, GI33519426, Length=432, Percent_Identity=37.037037037037, Blast_Score=251, Evalue=9e-67, Organism=Homo sapiens, GI148277071, Length=432, Percent_Identity=37.037037037037, Blast_Score=251, Evalue=9e-67, Organism=Homo sapiens, GI291045266, Length=477, Percent_Identity=34.3815513626834, Blast_Score=235, Evalue=7e-62, Organism=Homo sapiens, GI291045268, Length=477, Percent_Identity=31.6561844863732, Blast_Score=199, Evalue=5e-51, Organism=Homo sapiens, GI91199540, Length=459, Percent_Identity=29.6296296296296, Blast_Score=170, Evalue=2e-42, Organism=Escherichia coli, GI1789915, Length=451, Percent_Identity=67.6274944567627, Blast_Score=635, Evalue=0.0, Organism=Escherichia coli, GI1786307, Length=447, Percent_Identity=28.4116331096197, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI87082354, Length=463, Percent_Identity=26.133909287257, Blast_Score=131, Evalue=1e-31, Organism=Escherichia coli, GI87081717, Length=454, Percent_Identity=24.0088105726872, Blast_Score=121, Evalue=1e-28, Organism=Escherichia coli, GI1787114, Length=211, Percent_Identity=30.8056872037915, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983419, Length=451, Percent_Identity=54.1019955654102, Blast_Score=430, Evalue=1e-121, Organism=Caenorhabditis elegans, GI71983429, Length=451, Percent_Identity=54.1019955654102, Blast_Score=429, Evalue=1e-120, Organism=Caenorhabditis elegans, GI17557007, Length=472, Percent_Identity=32.8389830508475, Blast_Score=258, Evalue=4e-69, Organism=Caenorhabditis elegans, GI71982272, Length=480, Percent_Identity=35, Blast_Score=243, Evalue=2e-64, Organism=Caenorhabditis elegans, GI32565766, Length=462, Percent_Identity=28.7878787878788, Blast_Score=166, Evalue=3e-41, Organism=Caenorhabditis elegans, GI17559934, Length=194, Percent_Identity=27.319587628866, Blast_Score=73, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6325166, Length=465, Percent_Identity=50.1075268817204, Blast_Score=437, Evalue=1e-123, Organism=Saccharomyces cerevisiae, GI6321091, Length=467, Percent_Identity=26.9807280513919, Blast_Score=137, Evalue=2e-33, Organism=Saccharomyces cerevisiae, GI6325240, Length=467, Percent_Identity=24.1970021413276, Blast_Score=107, Evalue=3e-24, Organism=Drosophila melanogaster, GI24640553, Length=470, Percent_Identity=39.3617021276596, Blast_Score=283, Evalue=2e-76, Organism=Drosophila melanogaster, GI24640551, Length=470, Percent_Identity=39.3617021276596, Blast_Score=283, Evalue=2e-76, Organism=Drosophila melanogaster, GI24640549, Length=470, Percent_Identity=39.3617021276596, Blast_Score=283, Evalue=2e-76, Organism=Drosophila melanogaster, GI17737741, Length=473, Percent_Identity=38.2663847780127, Blast_Score=271, Evalue=5e-73, Organism=Drosophila melanogaster, GI21358499, Length=465, Percent_Identity=29.0322580645161, Blast_Score=159, Evalue=3e-39,
Paralogues:
None
Copy number: 650 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR006322 - InterPro: IPR004099 - InterPro: IPR012999 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.7 [H]
Molecular weight: Translated: 48145; Mature: 48014
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS00076 PYRIDINE_REDOX_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQHYDYICLGAGSGGIASANRAAIRGAKVLLIEAKHVGGTCVNVGCVPKKVMWYGAQVA CCCCCCEEEEECCCCCCCCCCHHHCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHH EAMHLYAKDYGFDVDVKNFDWNTLVASREAYIDRVHAAYGRGFASNGVTLVEGYGKFKNN HHHHHHHHHCCCEEEECCCCCHHEEHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC NTIEVNGEEYTADHILIATGGRPSIPNIPGAEHGIDSNGFFALSEQPKRVVVVGAGYIAV CEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEH EIAGVLHALGSETHLCVRKHSPLRSFDPMLSQALTDAMAENGPTLHTNAVPKAVEKNADG HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCC SLTLQLENGESITVDCLIWAIGREPATDKIGLENTDVTLDDKGYVIVDEWQQTSAKGIYC EEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCEEE VGDIMAGGIELTPVAVKAGRFLSERLFGGQPNAKMDYSLVPTVVFSHPPIGTMGLSEPDA EEEHHCCCEEEEEEEEHHHHHHHHHHCCCCCCCEECCEEECEEEECCCCCCCCCCCCCCC KAQYGEDQVKVYTSTFTSMYTAVTAHRQPCKMKLVCAGPDEKVVGIHGIGFGMDEILQGF HHHCCCCEEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHC GVAIKMGATKADFDAVVAIHPTGAEEFVTMR CEEEEECCCCCCCEEEEEEECCCCHHEEEEC >Mature Secondary Structure AQHYDYICLGAGSGGIASANRAAIRGAKVLLIEAKHVGGTCVNVGCVPKKVMWYGAQVA CCCCCEEEEECCCCCCCCCCHHHCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHH EAMHLYAKDYGFDVDVKNFDWNTLVASREAYIDRVHAAYGRGFASNGVTLVEGYGKFKNN HHHHHHHHHCCCEEEECCCCCHHEEHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC NTIEVNGEEYTADHILIATGGRPSIPNIPGAEHGIDSNGFFALSEQPKRVVVVGAGYIAV CEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEH EIAGVLHALGSETHLCVRKHSPLRSFDPMLSQALTDAMAENGPTLHTNAVPKAVEKNADG HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCC SLTLQLENGESITVDCLIWAIGREPATDKIGLENTDVTLDDKGYVIVDEWQQTSAKGIYC EEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCEEE VGDIMAGGIELTPVAVKAGRFLSERLFGGQPNAKMDYSLVPTVVFSHPPIGTMGLSEPDA EEEHHCCCEEEEEEEEHHHHHHHHHHCCCCCCCEECCEEECEEEECCCCCCCCCCCCCCC KAQYGEDQVKVYTSTFTSMYTAVTAHRQPCKMKLVCAGPDEKVVGIHGIGFGMDEILQGF HHHCCCCEEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHC GVAIKMGATKADFDAVVAIHPTGAEEFVTMR CEEEEECCCCCCCEEEEEEECCCCHHEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3521741; 8041620; 9278503; 2006135; 8061609 [H]