Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is ynaD [H]

Identifier: 119776649

GI number: 119776649

Start: 4151459

End: 4152019

Strand: Direct

Name: ynaD [H]

Synonym: Sama_3517

Alternate gene names: 119776649

Gene position: 4151459-4152019 (Clockwise)

Preceding gene: 119776648

Following gene: 119776650

Centisome position: 96.41

GC content: 57.4

Gene sequence:

>561_bases
ATGCTCACAGCTCCCCAACTTAAGGCAACGCGCTTGGCGCTGCGCCCACTGTCCCAACAAGACCTGGCGGCGTTCACCCT
CTACCGCCAACAGCCAGAGGTAGCCCGCTATCAAAGCTGGTCAGATTACGACATGGGCAAAGCCCAAGCCCTGCTGAATG
CACAGCTGGGCGGTACATTCGGCGCTGCCGGTTCCTGGTTTCAGATAGCCATAGTCGACAAAGACACGGATGCTTTGCTG
GGCGACCTGGCACTGCATTTTATCGACGAGAACCAGCTGGAAATCGGTTTTACCCTGGCTCCCCGACATCAGGGCCAAGG
CCTGGCGAAGGAAGCCGTCACCTGTCTGCTGGATTGGTATCTGCTACAGAATGGGGGCCACAGGGTGACTGCCATCTGTG
ATACAGAGAACCTGGCCAGTTGGCGACTGCTGGAAGCCCTGGGCTTCAGGCGCGAAGCCCACTGGGTGGAAAATATCTTT
TTTAAAGGGGCGTGGGGCTCAGAGTATCAATATGCCATGCTCGCCCGGGAGTGGCGCTCTCGCTCTGTGAATCGCTTTTA
A

Upstream 100 bases:

>100_bases
CAATTGGCGCAGAGGCTTACGCCAAGAGAAGACACACATCGCAACGTGTTGATTTTAATTAAATTACAACATGCCGACCG
GTTAGAACCAAGGACATTCC

Downstream 100 bases:

>100_bases
AACCAAAGCGCGACCCAGATCAGGAAACCGTACGCCAATCCCCCGAGTCATTCACGCCACACTTTGCAGCCCCGCCAAGG
GCGGTTACCATCAAACCATG

Product: ribosomal-protein-serine acetyltransferase

Products: CoA +ribosomal-protein N-acetyl-L-alanine [C]

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MLTAPQLKATRLALRPLSQQDLAAFTLYRQQPEVARYQSWSDYDMGKAQALLNAQLGGTFGAAGSWFQIAIVDKDTDALL
GDLALHFIDENQLEIGFTLAPRHQGQGLAKEAVTCLLDWYLLQNGGHRVTAICDTENLASWRLLEALGFRREAHWVENIF
FKGAWGSEYQYAMLAREWRSRSVNRF

Sequences:

>Translated_186_residues
MLTAPQLKATRLALRPLSQQDLAAFTLYRQQPEVARYQSWSDYDMGKAQALLNAQLGGTFGAAGSWFQIAIVDKDTDALL
GDLALHFIDENQLEIGFTLAPRHQGQGLAKEAVTCLLDWYLLQNGGHRVTAICDTENLASWRLLEALGFRREAHWVENIF
FKGAWGSEYQYAMLAREWRSRSVNRF
>Mature_186_residues
MLTAPQLKATRLALRPLSQQDLAAFTLYRQQPEVARYQSWSDYDMGKAQALLNAQLGGTFGAAGSWFQIAIVDKDTDALL
GDLALHFIDENQLEIGFTLAPRHQGQGLAKEAVTCLLDWYLLQNGGHRVTAICDTENLASWRLLEALGFRREAHWVENIF
FKGAWGSEYQYAMLAREWRSRSVNRF

Specific function: This Enzyme Acetylates The N-Terminal Alanine Of Ribosomal Protein S5. Plays Also A Role In The Temperature Regulation Of Pap Pilin Transcription. [C]

COG id: COG1670

COG function: function code J; Acetyltransferases, including N-acetylases of ribosomal proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 N-acetyltransferase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000182
- InterPro:   IPR016181 [H]

Pfam domain/function: PF00583 Acetyltransf_1 [H]

EC number: 2.3.1.128 [C]

Molecular weight: Translated: 21081; Mature: 21081

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTAPQLKATRLALRPLSQQDLAAFTLYRQQPEVARYQSWSDYDMGKAQALLNAQLGGTF
CCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCC
GAAGSWFQIAIVDKDTDALLGDLALHFIDENQLEIGFTLAPRHQGQGLAKEAVTCLLDWY
CCCCCEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
LLQNGGHRVTAICDTENLASWRLLEALGFRREAHWVENIFFKGAWGSEYQYAMLAREWRS
HHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHH
RSVNRF
CCCCCC
>Mature Secondary Structure
MLTAPQLKATRLALRPLSQQDLAAFTLYRQQPEVARYQSWSDYDMGKAQALLNAQLGGTF
CCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCC
GAAGSWFQIAIVDKDTDALLGDLALHFIDENQLEIGFTLAPRHQGQGLAKEAVTCLLDWY
CCCCCEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
LLQNGGHRVTAICDTENLASWRLLEALGFRREAHWVENIFFKGAWGSEYQYAMLAREWRS
HHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHH
RSVNRF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acetyl-CoA; ribosomal-protein L-alanine [C]

Specific reaction: Acetyl-CoA + ribosomal-protein L-alanine = CoA +ribosomal-protein N-acetyl-L-alanine [C]

General reaction: Acyl group transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]