| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is abgT [H]
Identifier: 119776555
GI number: 119776555
Start: 4053158
End: 4054705
Strand: Reverse
Name: abgT [H]
Synonym: Sama_3423
Alternate gene names: 119776555
Gene position: 4054705-4053158 (Counterclockwise)
Preceding gene: 119776560
Following gene: 119776550
Centisome position: 94.16
GC content: 58.07
Gene sequence:
>1548_bases ATGGAGACAGGTACGGCGACCCGGGAGGGAGGCCTCCTTGGCAAGTTTTTGAATGGCATCGAGAAGGCCGGGAATAAGCT GCCGGATCCGGCAGTGATATTTTTGCTGGCCATGGTGCTGATTTGGGGTCTGTCGGCGCTGTTTTCCCGCTTTGAGTTCA GCGCCATTGACCCCCGCACCGGCGAAGCCATTGTGGTGCATAACCTGCTGACCGGTGATTCGCTGGCGGGCTTCCTCGCC AATATGGTGAAAACATTCACCTCGTTCGCGCCGCTGGGGGTGGTGCTGGTGGCCATGCTGGGGGTTGGGGTGGCCGAGCA TTCGGGCTTTATCAATACCGGCCTGAAGATGATGCTCAAGGTGACACCGGCCAGGCTGCTGACACCATCCATCATACTGA TTGCCATCGTCAGCCACACTGCGACGGATGCGGGCTATGTGCTGGTTATCCCGCTTGCCGGAGTGATTTTCTACGCCATG GGTCGTCATCCACTGGCGGGCATTGCTGCGGCTTTTGCCGGGGTCTCCGGCGGTTTTGGCGCCAACTTTGTGCCCTCGGG GCTGGATCCCTTGCTGCAAAGCTTTACCCAGAGCGCGGCGCAAATCATCGACCCGGAAATCGCCATCAACCCGCTGAATA ACTGGTTCTTTGCCTCGGCGTCGAGCCTGCTGATTGTGCTGCTGGGCTGGTATCTCACCGACAAGGTGATTGAGCCGCGT CTGGCGAATACCCCAATCGATGGAGATACTTCCAACCTACCCAAGTTCGACGAGGCTGGCACACGTGAGAAGCAGGGCTT TTTGCTGGCTGTAACCGTGATGGTGGCTGGGCTGGTGCTCCTGTATCTGGCGGCAAGCCCGGCGGATTCTCCGCTAAGGG CCAAGAGCGGTAATTTGTCTGACTTCAGTGCGCCCCTGATGCAATCGATAGTGCCGCTGATTTTCCTGCTGTTTTGGATC CCCGGCGCCGTGTACGGCTTCTATGTGGGCACCTTCAAAAAGAGCAAGGACATGATAGATGCCATGTCCAAGTCCATGGG CAGCATGGCCTATTACATAGTGATGGCCTTCTTCTGTGCCCTGTTTATTGCGGCTTTCAGCCAGTCCAATCTGGGGGCTT TGCTGGCCATTGAAGGGGCCGAGGTGCTTAAGGCGTTGGCACTGCCAAGTGCGGTGACCATTGTCGGCATTATCTTCCTC ACCGCCTTTGTGAACCTGTTTGTGGGCTCAAGCTCGGCCAAGTGGGCGCTGCTGGGGCCGATTTTTGTGCCCATGCTGAT GCAGCTGAATATCTCCCCCGACCTGACCCAGGCGGCCTACCGGGTGGGCGACTCAGGTTCCAACATCATCACCCCGCTGA TGCCTTACTTCCCGCTGGTGGTGGTGTATTGCCAGAAGTATGTGAAAAACACCGGCATAGGTACCTTGATTGCCATGATG CTGCCGTTCTCGGTGGTGTTCCTGGTGGGCTGGACCGCCTTCCTGCTGCTGTACTGGACCCTGGGCTTCCCGCTGGGCCT GCAGGCGAGCTACACCTACGGTCTGTAG
Upstream 100 bases:
>100_bases ACTGCTGGAAAAGTGACTTTCCTTAAGTTGTATTTCATTCCTCCGTTCTAGGATGGTGGGTTAATTTAACAAAACCAAAA TCAATAAAGGGAGCAACAGC
Downstream 100 bases:
>100_bases GCTACGTAAGCTAAGGAAGGTGCGAATAAGTCCCGTGCTTGCTCTGCGTGTGCTTAAAGTGGATAGATGCAAGGCACAGT TTGCAGCGAATGGCCCTAGT
Product: transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 515; Mature: 515
Protein sequence:
>515_residues METGTATREGGLLGKFLNGIEKAGNKLPDPAVIFLLAMVLIWGLSALFSRFEFSAIDPRTGEAIVVHNLLTGDSLAGFLA NMVKTFTSFAPLGVVLVAMLGVGVAEHSGFINTGLKMMLKVTPARLLTPSIILIAIVSHTATDAGYVLVIPLAGVIFYAM GRHPLAGIAAAFAGVSGGFGANFVPSGLDPLLQSFTQSAAQIIDPEIAINPLNNWFFASASSLLIVLLGWYLTDKVIEPR LANTPIDGDTSNLPKFDEAGTREKQGFLLAVTVMVAGLVLLYLAASPADSPLRAKSGNLSDFSAPLMQSIVPLIFLLFWI PGAVYGFYVGTFKKSKDMIDAMSKSMGSMAYYIVMAFFCALFIAAFSQSNLGALLAIEGAEVLKALALPSAVTIVGIIFL TAFVNLFVGSSSAKWALLGPIFVPMLMQLNISPDLTQAAYRVGDSGSNIITPLMPYFPLVVVYCQKYVKNTGIGTLIAMM LPFSVVFLVGWTAFLLLYWTLGFPLGLQASYTYGL
Sequences:
>Translated_515_residues METGTATREGGLLGKFLNGIEKAGNKLPDPAVIFLLAMVLIWGLSALFSRFEFSAIDPRTGEAIVVHNLLTGDSLAGFLA NMVKTFTSFAPLGVVLVAMLGVGVAEHSGFINTGLKMMLKVTPARLLTPSIILIAIVSHTATDAGYVLVIPLAGVIFYAM GRHPLAGIAAAFAGVSGGFGANFVPSGLDPLLQSFTQSAAQIIDPEIAINPLNNWFFASASSLLIVLLGWYLTDKVIEPR LANTPIDGDTSNLPKFDEAGTREKQGFLLAVTVMVAGLVLLYLAASPADSPLRAKSGNLSDFSAPLMQSIVPLIFLLFWI PGAVYGFYVGTFKKSKDMIDAMSKSMGSMAYYIVMAFFCALFIAAFSQSNLGALLAIEGAEVLKALALPSAVTIVGIIFL TAFVNLFVGSSSAKWALLGPIFVPMLMQLNISPDLTQAAYRVGDSGSNIITPLMPYFPLVVVYCQKYVKNTGIGTLIAMM LPFSVVFLVGWTAFLLLYWTLGFPLGLQASYTYGL >Mature_515_residues METGTATREGGLLGKFLNGIEKAGNKLPDPAVIFLLAMVLIWGLSALFSRFEFSAIDPRTGEAIVVHNLLTGDSLAGFLA NMVKTFTSFAPLGVVLVAMLGVGVAEHSGFINTGLKMMLKVTPARLLTPSIILIAIVSHTATDAGYVLVIPLAGVIFYAM GRHPLAGIAAAFAGVSGGFGANFVPSGLDPLLQSFTQSAAQIIDPEIAINPLNNWFFASASSLLIVLLGWYLTDKVIEPR LANTPIDGDTSNLPKFDEAGTREKQGFLLAVTVMVAGLVLLYLAASPADSPLRAKSGNLSDFSAPLMQSIVPLIFLLFWI PGAVYGFYVGTFKKSKDMIDAMSKSMGSMAYYIVMAFFCALFIAAFSQSNLGALLAIEGAEVLKALALPSAVTIVGIIFL TAFVNLFVGSSSAKWALLGPIFVPMLMQLNISPDLTQAAYRVGDSGSNIITPLMPYFPLVVVYCQKYVKNTGIGTLIAMM LPFSVVFLVGWTAFLLLYWTLGFPLGLQASYTYGL
Specific function: Essential for aminobenzoyl-glutamate utilization. May transport aminobenzoyl-glutamate into the cell. Seems also to increase the sensitivity to low levels of aminobenzoyl-glutamate. Sufficient to confer aminobenzoyl-glutamate utilization phenotype [H]
COG id: COG2978
COG function: function code H; Putative p-aminobenzoyl-glutamate transporter
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081879, Length=493, Percent_Identity=34.2799188640974, Blast_Score=301, Evalue=7e-83,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004697 - InterPro: IPR011540 [H]
Pfam domain/function: PF03806 ABG_transport [H]
EC number: NA
Molecular weight: Translated: 54783; Mature: 54783
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METGTATREGGLLGKFLNGIEKAGNKLPDPAVIFLLAMVLIWGLSALFSRFEFSAIDPRT CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GEAIVVHNLLTGDSLAGFLANMVKTFTSFAPLGVVLVAMLGVGVAEHSGFINTGLKMMLK CCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHH VTPARLLTPSIILIAIVSHTATDAGYVLVIPLAGVIFYAMGRHPLAGIAAAFAGVSGGFG HCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC ANFVPSGLDPLLQSFTQSAAQIIDPEIAINPLNNWFFASASSLLIVLLGWYLTDKVIEPR CCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC LANTPIDGDTSNLPKFDEAGTREKQGFLLAVTVMVAGLVLLYLAASPADSPLRAKSGNLS CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC DFSAPLMQSIVPLIFLLFWIPGAVYGFYVGTFKKSKDMIDAMSKSMGSMAYYIVMAFFCA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFIAAFSQSNLGALLAIEGAEVLKALALPSAVTIVGIIFLTAFVNLFVGSSSAKWALLGP HHHHHHCCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHH IFVPMLMQLNISPDLTQAAYRVGDSGSNIITPLMPYFPLVVVYCQKYVKNTGIGTLIAMM HHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LPFSVVFLVGWTAFLLLYWTLGFPLGLQASYTYGL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure METGTATREGGLLGKFLNGIEKAGNKLPDPAVIFLLAMVLIWGLSALFSRFEFSAIDPRT CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GEAIVVHNLLTGDSLAGFLANMVKTFTSFAPLGVVLVAMLGVGVAEHSGFINTGLKMMLK CCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHH VTPARLLTPSIILIAIVSHTATDAGYVLVIPLAGVIFYAMGRHPLAGIAAAFAGVSGGFG HCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC ANFVPSGLDPLLQSFTQSAAQIIDPEIAINPLNNWFFASASSLLIVLLGWYLTDKVIEPR CCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC LANTPIDGDTSNLPKFDEAGTREKQGFLLAVTVMVAGLVLLYLAASPADSPLRAKSGNLS CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC DFSAPLMQSIVPLIFLLFWIPGAVYGFYVGTFKKSKDMIDAMSKSMGSMAYYIVMAFFCA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFIAAFSQSNLGALLAIEGAEVLKALALPSAVTIVGIIFLTAFVNLFVGSSSAKWALLGP HHHHHHCCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHH IFVPMLMQLNISPDLTQAAYRVGDSGSNIITPLMPYFPLVVVYCQKYVKNTGIGTLIAMM HHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LPFSVVFLVGWTAFLLLYWTLGFPLGLQASYTYGL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9829935; 9097039; 9278503; 2825131; 7567469 [H]