Click here to switch to the map view.

The map label for this gene is 119776560

Identifier: 119776560

GI number: 119776560

Start: 4058538

End: 4059083

Strand: Reverse

Name: 119776560

Synonym: Sama_3428

Alternate gene names: NA

Gene position: 4059083-4058538 (Counterclockwise)

Preceding gene: 119776561

Following gene: 119776555

Centisome position: 94.26

GC content: 52.93

Gene sequence:

>546_bases
ATGAAACTCAAGTGTCTTTTGGCTTCAGCCCTGATGCTGTGTGCCGTTTCGCCTGTTTTTGCCGCCAAAGATCTCGGTTT
TTACGCCGGTGGCTACGTCAGCAACACCAATCTCGATGATAAAATTGGCCCCTTCGATGAGTCGGCCTGGGGCCTGGGTG
CCTATGGCGGTTATAACTTCAACGACAGCTTTGGTCTCGAAACCAGCGTGTTCGGTACCGACAGCTTTATTGATGGTGTC
GACCTGCAGGTCGTGGGCCTGACTTTTGCCCCCACTGTGCGCCATGCATTCAGCGACACTGTCACTGTTTATCTCAAAGG
CGGTGTGGTGTATCAGGTGATTGCCAGTGACGACAGCCTGGACGATGACTATCAGGGTACGGGTTACCTGCTTGGCGCTG
GCGTAGATATCAGTTTCTCCAGCAATCTGGCCATGCGGGTATTCTATGAATTCAGTGAAATTGAGCCCGAGCACGATGAG
CTGAACAACTATTTTGCCAACACGCGCATGGACCATTATGGCGTGGGCCTGCACTGGCGCTTCTGA

Upstream 100 bases:

>100_bases
TTTATTTTTTCAGGAGATAGGCGCTAAAATAGGCAACTGCAACCAAGGAATAGTGGGCAGACACAGTGGGATGCCCAATT
CAACAGAAAAAGGATGTCCG

Downstream 100 bases:

>100_bases
GTCAGCCGATTGTTTAACGAAAAGGGACGCATGCTGCGTCCCTTTTCTTTGTGTCTCAAAAGGTGCTAATCCATCTCAAG
CTCTTTGAGTTTGCGGGTAA

Product: outer membrane protein

Products: NA

Alternate protein names: Outer Membrane Protein; OmpA Domain Protein Transmembrane Region-Containing Protein; OmpA-Like Transmembrane Region

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MKLKCLLASALMLCAVSPVFAAKDLGFYAGGYVSNTNLDDKIGPFDESAWGLGAYGGYNFNDSFGLETSVFGTDSFIDGV
DLQVVGLTFAPTVRHAFSDTVTVYLKGGVVYQVIASDDSLDDDYQGTGYLLGAGVDISFSSNLAMRVFYEFSEIEPEHDE
LNNYFANTRMDHYGVGLHWRF

Sequences:

>Translated_181_residues
MKLKCLLASALMLCAVSPVFAAKDLGFYAGGYVSNTNLDDKIGPFDESAWGLGAYGGYNFNDSFGLETSVFGTDSFIDGV
DLQVVGLTFAPTVRHAFSDTVTVYLKGGVVYQVIASDDSLDDDYQGTGYLLGAGVDISFSSNLAMRVFYEFSEIEPEHDE
LNNYFANTRMDHYGVGLHWRF
>Mature_181_residues
MKLKCLLASALMLCAVSPVFAAKDLGFYAGGYVSNTNLDDKIGPFDESAWGLGAYGGYNFNDSFGLETSVFGTDSFIDGV
DLQVVGLTFAPTVRHAFSDTVTVYLKGGVVYQVIASDDSLDDDYQGTGYLLGAGVDISFSSNLAMRVFYEFSEIEPEHDE
LNNYFANTRMDHYGVGLHWRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19791; Mature: 19791

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKCLLASALMLCAVSPVFAAKDLGFYAGGYVSNTNLDDKIGPFDESAWGLGAYGGYNF
CCHHHHHHHHHHHHHCCCHHHHHCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
NDSFGLETSVFGTDSFIDGVDLQVVGLTFAPTVRHAFSDTVTVYLKGGVVYQVIASDDSL
CCCCCCEEEECCCCCCCCCCCEEEEEEEECHHHHHHCCCEEEEEEECCEEEEEEECCCCC
DDDYQGTGYLLGAGVDISFSSNLAMRVFYEFSEIEPEHDELNNYFANTRMDHYGVGLHWR
CCCCCCCEEEEECCEEEEECCCEEEEEEEEHHHCCCCHHHHHHHHHHCCCCCCCCEEEEC
F
C
>Mature Secondary Structure
MKLKCLLASALMLCAVSPVFAAKDLGFYAGGYVSNTNLDDKIGPFDESAWGLGAYGGYNF
CCHHHHHHHHHHHHHCCCHHHHHCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
NDSFGLETSVFGTDSFIDGVDLQVVGLTFAPTVRHAFSDTVTVYLKGGVVYQVIASDDSL
CCCCCCEEEECCCCCCCCCCCEEEEEEEECHHHHHHCCCEEEEEEECCEEEEEEECCCCC
DDDYQGTGYLLGAGVDISFSSNLAMRVFYEFSEIEPEHDELNNYFANTRMDHYGVGLHWR
CCCCCCCEEEEECCEEEEECCCEEEEEEEEHHHCCCCHHHHHHHHHHCCCCCCCCEEEEC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA