| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776299
Identifier: 119776299
GI number: 119776299
Start: 3755074
End: 3755628
Strand: Reverse
Name: 119776299
Synonym: Sama_3167
Alternate gene names: NA
Gene position: 3755628-3755074 (Counterclockwise)
Preceding gene: 119776300
Following gene: 119776298
Centisome position: 87.22
GC content: 50.09
Gene sequence:
>555_bases ATGCTGAAAAAATTCCTTATCGTGATTTTATTGCTGTTAGCCGCCCCCTTTATGGTGGCCCTGTTTATTAAGTCGGATTA TGAGGTCAGTGTCAGTCGCACCATCGACCGTCCGCTTGATGAAGTCTTTGGCTACCTCAGATTGCTGAAGCATCAGGATG AATTCAGTGTCTGGGCCAAGATGGATCCCAACATGCAGCAGCATTTTACCGGCATAGATGGAGAGCCCGGTTTTGTCAGT GCCTGGGAGAGCAGCAATCCCGATGTGGGTAAAGGCGAGCAGGAAATTATCGCCATAGTGCCCGGTAAGCGAATTGATTA CGCGCTTCGTTTTATCGAACCCTTTACGTCCAACGACAGCGCTTATCTCATCACTGAGCCCATTGAAGACGGCAGCACCC TGGTGACCTGGGGTTTTGTGGGCCATATGTCGTATCCCATGAACCTGCTTATTCCCCTGATGGATGTTGAGTCCTTAATC CTGAAAGACCTGGATACCGGTCTTGCCAATTTGAAACAAATACTGGAGCGGCAGGCGACGCCCCAGCCTGAATGA
Upstream 100 bases:
>100_bases AGCGCTGCGCAGAGAGACTTGCCAAAGCAGATAAATTGGACATAAAACAGGTGAAGTAGCGGATTTGGCTGTACCGCAAT CACTGGAGCAGGAGCCCGCT
Downstream 100 bases:
>100_bases TTCTGGCTTTCCAATTGTTAACTATTCGTTGTAATCTGGTCGCTGCGCTCGCCCCGGCTCGGGGTGTGAGAAGAACAAGA TAAATAAGAAGAAAAGCATC
Product: hypothetical protein
Products: NA
Alternate protein names: Polyketide Cyclase; GCN5-Related N-Acetyltransferase; DoxX Family Domain-Containing Protein; Signal Peptide; DoxX Family Protein; Polyketide Cyclase / Dehydrase And Lipid Transport
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MLKKFLIVILLLLAAPFMVALFIKSDYEVSVSRTIDRPLDEVFGYLRLLKHQDEFSVWAKMDPNMQQHFTGIDGEPGFVS AWESSNPDVGKGEQEIIAIVPGKRIDYALRFIEPFTSNDSAYLITEPIEDGSTLVTWGFVGHMSYPMNLLIPLMDVESLI LKDLDTGLANLKQILERQATPQPE
Sequences:
>Translated_184_residues MLKKFLIVILLLLAAPFMVALFIKSDYEVSVSRTIDRPLDEVFGYLRLLKHQDEFSVWAKMDPNMQQHFTGIDGEPGFVS AWESSNPDVGKGEQEIIAIVPGKRIDYALRFIEPFTSNDSAYLITEPIEDGSTLVTWGFVGHMSYPMNLLIPLMDVESLI LKDLDTGLANLKQILERQATPQPE >Mature_184_residues MLKKFLIVILLLLAAPFMVALFIKSDYEVSVSRTIDRPLDEVFGYLRLLKHQDEFSVWAKMDPNMQQHFTGIDGEPGFVS AWESSNPDVGKGEQEIIAIVPGKRIDYALRFIEPFTSNDSAYLITEPIEDGSTLVTWGFVGHMSYPMNLLIPLMDVESLI LKDLDTGLANLKQILERQATPQPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20774; Mature: 20774
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKFLIVILLLLAAPFMVALFIKSDYEVSVSRTIDRPLDEVFGYLRLLKHQDEFSVWAK CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCHHHHHHHHHHHHCCCCCEEEEE MDPNMQQHFTGIDGEPGFVSAWESSNPDVGKGEQEIIAIVPGKRIDYALRFIEPFTSNDS CCCCHHHHCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCC AYLITEPIEDGSTLVTWGFVGHMSYPMNLLIPLMDVESLILKDLDTGLANLKQILERQAT EEEEECCCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PQPE CCCC >Mature Secondary Structure MLKKFLIVILLLLAAPFMVALFIKSDYEVSVSRTIDRPLDEVFGYLRLLKHQDEFSVWAK CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCHHHHHHHHHHHHCCCCCEEEEE MDPNMQQHFTGIDGEPGFVSAWESSNPDVGKGEQEIIAIVPGKRIDYALRFIEPFTSNDS CCCCHHHHCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCC AYLITEPIEDGSTLVTWGFVGHMSYPMNLLIPLMDVESLILKDLDTGLANLKQILERQAT EEEEECCCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PQPE CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA