| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776300
Identifier: 119776300
GI number: 119776300
Start: 3755670
End: 3755870
Strand: Reverse
Name: 119776300
Synonym: Sama_3168
Alternate gene names: NA
Gene position: 3755870-3755670 (Counterclockwise)
Preceding gene: 119776301
Following gene: 119776299
Centisome position: 87.22
GC content: 51.74
Gene sequence:
>201_bases ATGACTAACCCCAAGCAGTGCCCGCTTTGCCAGGCTAACAATGATTGCGCCGTACAAATCGGTAAATCCATTGACGCTTG CTGGTGTGTGGGCGCCCAATTTCCCCGACAATTGCCCCAAGACAGGACCTCATGTCTGTGCCAGCGCTGCGCAGAGAGAC TTGCCAAAGCAGATAAATTGGACATAAAACAGGTGAAGTAG
Upstream 100 bases:
>100_bases CCTACTGTGGAGCGCTGTGCTGATTTACGCGCTTCTGTCCTTTGGCAGCCTCCTGTACCGCTTGATGAGGTTGAAACATT GCTACCGACAGCGACCTTGA
Downstream 100 bases:
>100_bases CGGATTTGGCTGTACCGCAATCACTGGAGCAGGAGCCCGCTATGCTGAAAAAATTCCTTATCGTGATTTTATTGCTGTTA GCCGCCCCCTTTATGGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 66; Mature: 65
Protein sequence:
>66_residues MTNPKQCPLCQANNDCAVQIGKSIDACWCVGAQFPRQLPQDRTSCLCQRCAERLAKADKLDIKQVK
Sequences:
>Translated_66_residues MTNPKQCPLCQANNDCAVQIGKSIDACWCVGAQFPRQLPQDRTSCLCQRCAERLAKADKLDIKQVK >Mature_65_residues TNPKQCPLCQANNDCAVQIGKSIDACWCVGAQFPRQLPQDRTSCLCQRCAERLAKADKLDIKQVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7353; Mature: 7221
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
12.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 13.6 %Cys+Met (Translated Protein) 12.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 12.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNPKQCPLCQANNDCAVQIGKSIDACWCVGAQFPRQLPQDRTSCLCQRCAERLAKADKL CCCCCCCCCCCCCCCCEEEECCCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHCCCCC DIKQVK CCCCCC >Mature Secondary Structure TNPKQCPLCQANNDCAVQIGKSIDACWCVGAQFPRQLPQDRTSCLCQRCAERLAKADKL CCCCCCCCCCCCCCCEEEECCCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHCCCCC DIKQVK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA