| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is fhs
Identifier: 119776278
GI number: 119776278
Start: 3733497
End: 3735179
Strand: Reverse
Name: fhs
Synonym: Sama_3146
Alternate gene names: 119776278
Gene position: 3735179-3733497 (Counterclockwise)
Preceding gene: 119776280
Following gene: 119776276
Centisome position: 86.74
GC content: 59.71
Gene sequence:
>1683_bases ATGTTGACTGATATGGAAATTTCCCGGCAGGCCAATGTACGCCCCATAGGCTGGATTGCCGATGACTTTGGTCTTGGCAA GCATTTGTGGCGGGAGGCCGGTCATGCCATGGCCAAAATCAGCCTTGAAGCCGCCCGCGCGCCTTTGCGTGGCAAGCTGG TTATAGTCACCGCCGTCACACCCACTCCCCATGGCGAAGGTAAAACCGTGACCACCATAGGGCTCACCCAGGGGCTGCAT CTGCTGGGGCACAAGGCTTGTGCCTGTATCCGTCAGCCCAGTCTCGGCCCTGTTTTCGGGGTTAAAGGCGGCGCCGCCGG TGGGGGATATGCCCAGGTGGTGCCCATGGAGGTGATGAACCTGCATATGACCGGTGACATCCATGCCGTCACCAGTGCCC ATAACCTGGCTGCCGCCGCCATCGATGCCCGCCTGTTTCATGAAACCCGTCTGGGGTGTGAATCGTTCAGCGCCAAAACG GGATTACCGGCGCTGAATATCGACCCCGAGCGCATTCTCTGGCGCCGGGTGGTGGACCACAACGATCGCAGCCTGCGCCA GATTGAACTTGGTCTTGGGGATAACAATGGTCCGGTTCACGGCGGGGGCTTTGATATCACGGCGGCCTCTGAACTCATGG CCATTCTGGCCCTGTGCGAAAACATCGCCGATATGCGTGCCCGGATCGGGCGGGTTATTCTGGCCATGAGCCGGGACGGT AAACCCATCAGTGCCGATGATCTCGGTGTGGCCGGTGCCATGACCGCCATCATGCGTGATGCCATCGAACCGACGTTGAT GCAAACCCTGAGCGGGGCACCCTGCCTGGTTCATGCGGGCCCCTTTGCCAATATCGCCCATGGCAACTCTTCCATTATCG CCGACCGGGTGGCCCTGGCACACCACGACTACGTGGTGACAGAGGGGGGATTTGGCTCCGACATGGGCTTTGAAAAGTTC TGCAACATCAAGAGCCGCGCCTCGGGCATTGCCCCTTCCGCCGCCGTGTTGGTGGTGACCTTAAGGGCGCTTAAGGCCAA CTCAGGCGTGGAAGGCGACGACAGAGCGCGTCTGGAAGCCGGCTTTGCCAACCTGCACTGGCACATGCAAAACGTGATGG GCTATGGCCTGCCGTTGGTGGTGGCCATCAATCGATTCCCCGACGATGCGATGGCCGAACTGGACTGGCTCAAAGAACGT TGCCTTGAAGAAGGGGCCTTTGGCTGCGAAATCAGCGATGCCTTCAGCCACGGTGCCGAGGGCGCTCGGGCGCTGGCCAC TGCAGTCGCCCGTGCCTGCGATGCGCCGGTAAACTTTGAGTATCTCTATGACGACGAGATGGACTTTGGTGCCCGCCTGA TGACCCTGGCAGAGCGTTATGGTGCGGCAGGCGTAAGTCTGTCTGAGGACGCGCGTCGGGATCTGGCGATGATTACCGAG CTTGGGATGGACAAATTGCCCCTGTGCATGGCCAAAACCCCTTTGTCCATCAGCCATGATCCTTCGCTCAAAGGAGCCCC CAGTGGCTTTGAGCTGCCTGTGGTCGGCTTACGTTTGAGTGCCGGTGCGGGCTTTATTACTGTGCTCACAGGCAAGGTGA TGACCATGCCGGGGTTGGGGCTCCTGCCCGGCTATCTGAATATCGACATCAATGACAAGGGCGAAATAATCGGCCTGGGA TGA
Upstream 100 bases:
>100_bases TCTTTAGCCCGGGTCTTTGGCTTAGGCTGTGTTGAGCCAGGACCCGCCACAGGGTCTCACAATAACAATCACAAGCATAC CCTACAGCGAGAACTCCACT
Downstream 100 bases:
>100_bases TGGATGCAGATGAGTGACAAGAAAGGCACCCTCGGGTGCCTTTCTGTTTTCAGCGATTTGCTGTGGTCAAGCGCGATAGA AGTGCACATCCCGCTGCGGG
Product: formate--tetrahydrofolate ligase
Products: NA
Alternate protein names: Formyltetrahydrofolate synthetase; FHS; FTHFS
Number of amino acids: Translated: 560; Mature: 560
Protein sequence:
>560_residues MLTDMEISRQANVRPIGWIADDFGLGKHLWREAGHAMAKISLEAARAPLRGKLVIVTAVTPTPHGEGKTVTTIGLTQGLH LLGHKACACIRQPSLGPVFGVKGGAAGGGYAQVVPMEVMNLHMTGDIHAVTSAHNLAAAAIDARLFHETRLGCESFSAKT GLPALNIDPERILWRRVVDHNDRSLRQIELGLGDNNGPVHGGGFDITAASELMAILALCENIADMRARIGRVILAMSRDG KPISADDLGVAGAMTAIMRDAIEPTLMQTLSGAPCLVHAGPFANIAHGNSSIIADRVALAHHDYVVTEGGFGSDMGFEKF CNIKSRASGIAPSAAVLVVTLRALKANSGVEGDDRARLEAGFANLHWHMQNVMGYGLPLVVAINRFPDDAMAELDWLKER CLEEGAFGCEISDAFSHGAEGARALATAVARACDAPVNFEYLYDDEMDFGARLMTLAERYGAAGVSLSEDARRDLAMITE LGMDKLPLCMAKTPLSISHDPSLKGAPSGFELPVVGLRLSAGAGFITVLTGKVMTMPGLGLLPGYLNIDINDKGEIIGLG
Sequences:
>Translated_560_residues MLTDMEISRQANVRPIGWIADDFGLGKHLWREAGHAMAKISLEAARAPLRGKLVIVTAVTPTPHGEGKTVTTIGLTQGLH LLGHKACACIRQPSLGPVFGVKGGAAGGGYAQVVPMEVMNLHMTGDIHAVTSAHNLAAAAIDARLFHETRLGCESFSAKT GLPALNIDPERILWRRVVDHNDRSLRQIELGLGDNNGPVHGGGFDITAASELMAILALCENIADMRARIGRVILAMSRDG KPISADDLGVAGAMTAIMRDAIEPTLMQTLSGAPCLVHAGPFANIAHGNSSIIADRVALAHHDYVVTEGGFGSDMGFEKF CNIKSRASGIAPSAAVLVVTLRALKANSGVEGDDRARLEAGFANLHWHMQNVMGYGLPLVVAINRFPDDAMAELDWLKER CLEEGAFGCEISDAFSHGAEGARALATAVARACDAPVNFEYLYDDEMDFGARLMTLAERYGAAGVSLSEDARRDLAMITE LGMDKLPLCMAKTPLSISHDPSLKGAPSGFELPVVGLRLSAGAGFITVLTGKVMTMPGLGLLPGYLNIDINDKGEIIGLG >Mature_560_residues MLTDMEISRQANVRPIGWIADDFGLGKHLWREAGHAMAKISLEAARAPLRGKLVIVTAVTPTPHGEGKTVTTIGLTQGLH LLGHKACACIRQPSLGPVFGVKGGAAGGGYAQVVPMEVMNLHMTGDIHAVTSAHNLAAAAIDARLFHETRLGCESFSAKT GLPALNIDPERILWRRVVDHNDRSLRQIELGLGDNNGPVHGGGFDITAASELMAILALCENIADMRARIGRVILAMSRDG KPISADDLGVAGAMTAIMRDAIEPTLMQTLSGAPCLVHAGPFANIAHGNSSIIADRVALAHHDYVVTEGGFGSDMGFEKF CNIKSRASGIAPSAAVLVVTLRALKANSGVEGDDRARLEAGFANLHWHMQNVMGYGLPLVVAINRFPDDAMAELDWLKER CLEEGAFGCEISDAFSHGAEGARALATAVARACDAPVNFEYLYDDEMDFGARLMTLAERYGAAGVSLSEDARRDLAMITE LGMDKLPLCMAKTPLSISHDPSLKGAPSGFELPVVGLRLSAGAGFITVLTGKVMTMPGLGLLPGYLNIDINDKGEIIGLG
Specific function: Unknown
COG id: COG2759
COG function: function code F; Formyltetrahydrofolate synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the formate--tetrahydrofolate ligase family
Homologues:
Organism=Homo sapiens, GI222136639, Length=616, Percent_Identity=45.2922077922078, Blast_Score=475, Evalue=1e-134, Organism=Homo sapiens, GI36796743, Length=614, Percent_Identity=44.6254071661238, Blast_Score=445, Evalue=1e-125, Organism=Homo sapiens, GI310124614, Length=81, Percent_Identity=45.679012345679, Blast_Score=72, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17568737, Length=618, Percent_Identity=45.9546925566343, Blast_Score=471, Evalue=1e-133, Organism=Caenorhabditis elegans, GI17568739, Length=618, Percent_Identity=45.9546925566343, Blast_Score=471, Evalue=1e-133, Organism=Saccharomyces cerevisiae, GI6321643, Length=624, Percent_Identity=43.75, Blast_Score=464, Evalue=1e-131, Organism=Saccharomyces cerevisiae, GI6319558, Length=629, Percent_Identity=42.2893481717011, Blast_Score=447, Evalue=1e-126, Organism=Drosophila melanogaster, GI24645718, Length=618, Percent_Identity=43.042071197411, Blast_Score=418, Evalue=1e-117, Organism=Drosophila melanogaster, GI17137370, Length=618, Percent_Identity=43.042071197411, Blast_Score=418, Evalue=1e-117, Organism=Drosophila melanogaster, GI62472483, Length=618, Percent_Identity=43.042071197411, Blast_Score=417, Evalue=1e-117, Organism=Drosophila melanogaster, GI45551871, Length=618, Percent_Identity=43.042071197411, Blast_Score=417, Evalue=1e-117,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FTHS_SHEAM (A1SAE2)
Other databases:
- EMBL: CP000507 - RefSeq: YP_929018.1 - STRING: A1SAE2 - GeneID: 4605393 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_3146 - NMPDR: fig|326297.7.peg.2959 - eggNOG: COG2759 - HOGENOM: HBG677721 - OMA: EIMAVLC - PhylomeDB: A1SAE2 - ProtClustDB: PRK13506 - HAMAP: MF_01543 - InterPro: IPR000559 - InterPro: IPR020628
Pfam domain/function: PF01268 FTHFS
EC number: =6.3.4.3
Molecular weight: Translated: 59202; Mature: 59202
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: PS00721 FTHFS_1; PS00722 FTHFS_2; PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTDMEISRQANVRPIGWIADDFGLGKHLWREAGHAMAKISLEAARAPLRGKLVIVTAVT CCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCHHHEEEEHHHHCCCCCCCEEEEEEEC PTPHGEGKTVTTIGLTQGLHLLGHKACACIRQPSLGPVFGVKGGAAGGGYAQVVPMEVMN CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEEEHEE LHMTGDIHAVTSAHNLAAAAIDARLFHETRLGCESFSAKTGLPALNIDPERILWRRVVDH EEECCCEEEECCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHCC NDRSLRQIELGLGDNNGPVHGGGFDITAASELMAILALCENIADMRARIGRVILAMSRDG CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC KPISADDLGVAGAMTAIMRDAIEPTLMQTLSGAPCLVHAGPFANIAHGNSSIIADRVALA CCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCEECCCCCCHHHHHHHHH HHDYVVTEGGFGSDMGFEKFCNIKSRASGIAPSAAVLVVTLRALKANSGVEGDDRARLEA CCCEEEECCCCCCCCCHHHHHCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH GFANLHWHMQNVMGYGLPLVVAINRFPDDAMAELDWLKERCLEEGAFGCEISDAFSHGAE CHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCC GARALATAVARACDAPVNFEYLYDDEMDFGARLMTLAERYGAAGVSLSEDARRDLAMITE HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH LGMDKLPLCMAKTPLSISHDPSLKGAPSGFELPVVGLRLSAGAGFITVLTGKVMTMPGLG CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCEEECCCCC LLPGYLNIDINDKGEIIGLG CCCCEEEEEECCCCCEEECC >Mature Secondary Structure MLTDMEISRQANVRPIGWIADDFGLGKHLWREAGHAMAKISLEAARAPLRGKLVIVTAVT CCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCHHHEEEEHHHHCCCCCCCEEEEEEEC PTPHGEGKTVTTIGLTQGLHLLGHKACACIRQPSLGPVFGVKGGAAGGGYAQVVPMEVMN CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEEEHEE LHMTGDIHAVTSAHNLAAAAIDARLFHETRLGCESFSAKTGLPALNIDPERILWRRVVDH EEECCCEEEECCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHCC NDRSLRQIELGLGDNNGPVHGGGFDITAASELMAILALCENIADMRARIGRVILAMSRDG CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC KPISADDLGVAGAMTAIMRDAIEPTLMQTLSGAPCLVHAGPFANIAHGNSSIIADRVALA CCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCEECCCCCCHHHHHHHHH HHDYVVTEGGFGSDMGFEKFCNIKSRASGIAPSAAVLVVTLRALKANSGVEGDDRARLEA CCCEEEECCCCCCCCCHHHHHCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH GFANLHWHMQNVMGYGLPLVVAINRFPDDAMAELDWLKERCLEEGAFGCEISDAFSHGAE CHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCC GARALATAVARACDAPVNFEYLYDDEMDFGARLMTLAERYGAAGVSLSEDARRDLAMITE HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH LGMDKLPLCMAKTPLSISHDPSLKGAPSGFELPVVGLRLSAGAGFITVLTGKVMTMPGLG CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCEEECCCCC LLPGYLNIDINDKGEIIGLG CCCCEEEEEECCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA