| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776265
Identifier: 119776265
GI number: 119776265
Start: 3721789
End: 3722700
Strand: Direct
Name: 119776265
Synonym: Sama_3133
Alternate gene names: NA
Gene position: 3721789-3722700 (Clockwise)
Preceding gene: 119776264
Following gene: 119776268
Centisome position: 86.43
GC content: 59.54
Gene sequence:
>912_bases GTGGGTTATCATCAACAGAAACATAGCCTGAAACACGGAAATTCCATGCGCGCCTTCTTCTCCTTCAGCCTCAGTTTTCT GCTGAGCCTGAGTCTGCTGTGGCCCACAACCCAGGCCGCCGAAGACCCGGCATACGATTACCTCAAGAGCCGCCAGATGC GCGCCATCACGGTGGAAGACGCCGAGCTGCCGGTGTTGGTTCGCCCCTGGGAAGGTAAAAATCAGCATGGCGCTGCGCTG ATATTTGCCGATACCGGTTTTGGCGCCGATGCCCCGGGACTGGTGGCCTTTTTGCGGGATGGTTTAAGCCCACTCGGTTG GGCCAGTATCAGTATGACGCCCCCCAGTAACCCACCCCACCCGAGTTTTGCCACCGCCCCCGAAGAAGTGGCCAAGGCTG GCGACAAGCAGCTCTCATTGCCTCCCGGCAAGGCCATGGACAAATTCAGCCAAGAGGAATGGCAACAGCATGTGGATACC CAACTGGGCTTTGTGGAAGCAAGCCTTGGACAGCTTGATCAAATAGGCGCGGCGTATCCCGGTAAACGTATCCTGGTGAG CATGGATCGCAGCGCGGCCCTGTTGCTGCAGCTGCTGGCCGATGGCAAGGTGGCGCCACCGGATCTGTTGGTGATCATCA ACCCCTACAGCGAATCCCCCGACTTTGACGAACGCCTTCCGGGGCTGGTGGCCATGCAGGAAGTGCCTGTGCTGGATATT CAGTCGCCGGATGGCAACAGAGCAAGCCTCTCGACCGCCTCACTGCGCCGAGCCAACTCGGCCATGAAAGATGCCATGGC CTATCGTCAATTGCCCTTGGCACTCAATATCAGCGAGCCCGATGCCTGGGCCGATGTGCTCAGCGCCATCCGTGGCTTTG CCGCCAGCGTCAAGGCCGCGCCCGGTAACTGA
Upstream 100 bases:
>100_bases TGCTTTGGGACAATAAGACAAAGGCCCGGCACGCTTATGCCGGGCTCAACCTCAAATGTCGGTTTCAGCACTGAGTTATG GGTTCTTTGGGAGGCGCAGT
Downstream 100 bases:
>100_bases TTCAGGCCTGCTTGTCCTTGGTGAGCATAAGCGCGAGGGCAACCAACACCACCACGCCGGCCATATACAGCAGCTCCAGC GCACTCTGTGGCTTAAGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MGYHQQKHSLKHGNSMRAFFSFSLSFLLSLSLLWPTTQAAEDPAYDYLKSRQMRAITVEDAELPVLVRPWEGKNQHGAAL IFADTGFGADAPGLVAFLRDGLSPLGWASISMTPPSNPPHPSFATAPEEVAKAGDKQLSLPPGKAMDKFSQEEWQQHVDT QLGFVEASLGQLDQIGAAYPGKRILVSMDRSAALLLQLLADGKVAPPDLLVIINPYSESPDFDERLPGLVAMQEVPVLDI QSPDGNRASLSTASLRRANSAMKDAMAYRQLPLALNISEPDAWADVLSAIRGFAASVKAAPGN
Sequences:
>Translated_303_residues MGYHQQKHSLKHGNSMRAFFSFSLSFLLSLSLLWPTTQAAEDPAYDYLKSRQMRAITVEDAELPVLVRPWEGKNQHGAAL IFADTGFGADAPGLVAFLRDGLSPLGWASISMTPPSNPPHPSFATAPEEVAKAGDKQLSLPPGKAMDKFSQEEWQQHVDT QLGFVEASLGQLDQIGAAYPGKRILVSMDRSAALLLQLLADGKVAPPDLLVIINPYSESPDFDERLPGLVAMQEVPVLDI QSPDGNRASLSTASLRRANSAMKDAMAYRQLPLALNISEPDAWADVLSAIRGFAASVKAAPGN >Mature_302_residues GYHQQKHSLKHGNSMRAFFSFSLSFLLSLSLLWPTTQAAEDPAYDYLKSRQMRAITVEDAELPVLVRPWEGKNQHGAALI FADTGFGADAPGLVAFLRDGLSPLGWASISMTPPSNPPHPSFATAPEEVAKAGDKQLSLPPGKAMDKFSQEEWQQHVDTQ LGFVEASLGQLDQIGAAYPGKRILVSMDRSAALLLQLLADGKVAPPDLLVIINPYSESPDFDERLPGLVAMQEVPVLDIQ SPDGNRASLSTASLRRANSAMKDAMAYRQLPLALNISEPDAWADVLSAIRGFAASVKAAPGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32674; Mature: 32543
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYHQQKHSLKHGNSMRAFFSFSLSFLLSLSLLWPTTQAAEDPAYDYLKSRQMRAITVED CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEEEEC AELPVLVRPWEGKNQHGAALIFADTGFGADAPGLVAFLRDGLSPLGWASISMTPPSNPPH CCCCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCC PSFATAPEEVAKAGDKQLSLPPGKAMDKFSQEEWQQHVDTQLGFVEASLGQLDQIGAAYP CCCCCCHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GKRILVSMDRSAALLLQLLADGKVAPPDLLVIINPYSESPDFDERLPGLVAMQEVPVLDI CCEEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHCCCCEEHHCCCEEEE QSPDGNRASLSTASLRRANSAMKDAMAYRQLPLALNISEPDAWADVLSAIRGFAASVKAA ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCC PGN CCC >Mature Secondary Structure GYHQQKHSLKHGNSMRAFFSFSLSFLLSLSLLWPTTQAAEDPAYDYLKSRQMRAITVED CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEEEEC AELPVLVRPWEGKNQHGAALIFADTGFGADAPGLVAFLRDGLSPLGWASISMTPPSNPPH CCCCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCC PSFATAPEEVAKAGDKQLSLPPGKAMDKFSQEEWQQHVDTQLGFVEASLGQLDQIGAAYP CCCCCCHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GKRILVSMDRSAALLLQLLADGKVAPPDLLVIINPYSESPDFDERLPGLVAMQEVPVLDI CCEEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHCCCCEEHHCCCEEEE QSPDGNRASLSTASLRRANSAMKDAMAYRQLPLALNISEPDAWADVLSAIRGFAASVKAA ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCC PGN CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA