Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776265

Identifier: 119776265

GI number: 119776265

Start: 3721789

End: 3722700

Strand: Direct

Name: 119776265

Synonym: Sama_3133

Alternate gene names: NA

Gene position: 3721789-3722700 (Clockwise)

Preceding gene: 119776264

Following gene: 119776268

Centisome position: 86.43

GC content: 59.54

Gene sequence:

>912_bases
GTGGGTTATCATCAACAGAAACATAGCCTGAAACACGGAAATTCCATGCGCGCCTTCTTCTCCTTCAGCCTCAGTTTTCT
GCTGAGCCTGAGTCTGCTGTGGCCCACAACCCAGGCCGCCGAAGACCCGGCATACGATTACCTCAAGAGCCGCCAGATGC
GCGCCATCACGGTGGAAGACGCCGAGCTGCCGGTGTTGGTTCGCCCCTGGGAAGGTAAAAATCAGCATGGCGCTGCGCTG
ATATTTGCCGATACCGGTTTTGGCGCCGATGCCCCGGGACTGGTGGCCTTTTTGCGGGATGGTTTAAGCCCACTCGGTTG
GGCCAGTATCAGTATGACGCCCCCCAGTAACCCACCCCACCCGAGTTTTGCCACCGCCCCCGAAGAAGTGGCCAAGGCTG
GCGACAAGCAGCTCTCATTGCCTCCCGGCAAGGCCATGGACAAATTCAGCCAAGAGGAATGGCAACAGCATGTGGATACC
CAACTGGGCTTTGTGGAAGCAAGCCTTGGACAGCTTGATCAAATAGGCGCGGCGTATCCCGGTAAACGTATCCTGGTGAG
CATGGATCGCAGCGCGGCCCTGTTGCTGCAGCTGCTGGCCGATGGCAAGGTGGCGCCACCGGATCTGTTGGTGATCATCA
ACCCCTACAGCGAATCCCCCGACTTTGACGAACGCCTTCCGGGGCTGGTGGCCATGCAGGAAGTGCCTGTGCTGGATATT
CAGTCGCCGGATGGCAACAGAGCAAGCCTCTCGACCGCCTCACTGCGCCGAGCCAACTCGGCCATGAAAGATGCCATGGC
CTATCGTCAATTGCCCTTGGCACTCAATATCAGCGAGCCCGATGCCTGGGCCGATGTGCTCAGCGCCATCCGTGGCTTTG
CCGCCAGCGTCAAGGCCGCGCCCGGTAACTGA

Upstream 100 bases:

>100_bases
TGCTTTGGGACAATAAGACAAAGGCCCGGCACGCTTATGCCGGGCTCAACCTCAAATGTCGGTTTCAGCACTGAGTTATG
GGTTCTTTGGGAGGCGCAGT

Downstream 100 bases:

>100_bases
TTCAGGCCTGCTTGTCCTTGGTGAGCATAAGCGCGAGGGCAACCAACACCACCACGCCGGCCATATACAGCAGCTCCAGC
GCACTCTGTGGCTTAAGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MGYHQQKHSLKHGNSMRAFFSFSLSFLLSLSLLWPTTQAAEDPAYDYLKSRQMRAITVEDAELPVLVRPWEGKNQHGAAL
IFADTGFGADAPGLVAFLRDGLSPLGWASISMTPPSNPPHPSFATAPEEVAKAGDKQLSLPPGKAMDKFSQEEWQQHVDT
QLGFVEASLGQLDQIGAAYPGKRILVSMDRSAALLLQLLADGKVAPPDLLVIINPYSESPDFDERLPGLVAMQEVPVLDI
QSPDGNRASLSTASLRRANSAMKDAMAYRQLPLALNISEPDAWADVLSAIRGFAASVKAAPGN

Sequences:

>Translated_303_residues
MGYHQQKHSLKHGNSMRAFFSFSLSFLLSLSLLWPTTQAAEDPAYDYLKSRQMRAITVEDAELPVLVRPWEGKNQHGAAL
IFADTGFGADAPGLVAFLRDGLSPLGWASISMTPPSNPPHPSFATAPEEVAKAGDKQLSLPPGKAMDKFSQEEWQQHVDT
QLGFVEASLGQLDQIGAAYPGKRILVSMDRSAALLLQLLADGKVAPPDLLVIINPYSESPDFDERLPGLVAMQEVPVLDI
QSPDGNRASLSTASLRRANSAMKDAMAYRQLPLALNISEPDAWADVLSAIRGFAASVKAAPGN
>Mature_302_residues
GYHQQKHSLKHGNSMRAFFSFSLSFLLSLSLLWPTTQAAEDPAYDYLKSRQMRAITVEDAELPVLVRPWEGKNQHGAALI
FADTGFGADAPGLVAFLRDGLSPLGWASISMTPPSNPPHPSFATAPEEVAKAGDKQLSLPPGKAMDKFSQEEWQQHVDTQ
LGFVEASLGQLDQIGAAYPGKRILVSMDRSAALLLQLLADGKVAPPDLLVIINPYSESPDFDERLPGLVAMQEVPVLDIQ
SPDGNRASLSTASLRRANSAMKDAMAYRQLPLALNISEPDAWADVLSAIRGFAASVKAAPGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32674; Mature: 32543

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYHQQKHSLKHGNSMRAFFSFSLSFLLSLSLLWPTTQAAEDPAYDYLKSRQMRAITVED
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEEEEC
AELPVLVRPWEGKNQHGAALIFADTGFGADAPGLVAFLRDGLSPLGWASISMTPPSNPPH
CCCCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCC
PSFATAPEEVAKAGDKQLSLPPGKAMDKFSQEEWQQHVDTQLGFVEASLGQLDQIGAAYP
CCCCCCHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GKRILVSMDRSAALLLQLLADGKVAPPDLLVIINPYSESPDFDERLPGLVAMQEVPVLDI
CCEEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHCCCCEEHHCCCEEEE
QSPDGNRASLSTASLRRANSAMKDAMAYRQLPLALNISEPDAWADVLSAIRGFAASVKAA
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCC
PGN
CCC
>Mature Secondary Structure 
GYHQQKHSLKHGNSMRAFFSFSLSFLLSLSLLWPTTQAAEDPAYDYLKSRQMRAITVED
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEEEEC
AELPVLVRPWEGKNQHGAALIFADTGFGADAPGLVAFLRDGLSPLGWASISMTPPSNPPH
CCCCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCC
PSFATAPEEVAKAGDKQLSLPPGKAMDKFSQEEWQQHVDTQLGFVEASLGQLDQIGAAYP
CCCCCCHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GKRILVSMDRSAALLLQLLADGKVAPPDLLVIINPYSESPDFDERLPGLVAMQEVPVLDI
CCEEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHCCCCEEHHCCCEEEE
QSPDGNRASLSTASLRRANSAMKDAMAYRQLPLALNISEPDAWADVLSAIRGFAASVKAA
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCC
PGN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA