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The map label for this gene is ytcJ [H]

Identifier: 119776264

GI number: 119776264

Start: 3720007

End: 3721704

Strand: Direct

Name: ytcJ [H]

Synonym: Sama_3132

Alternate gene names: 119776264

Gene position: 3720007-3721704 (Clockwise)

Preceding gene: 119776263

Following gene: 119776265

Centisome position: 86.39

GC content: 61.25

Gene sequence:

>1698_bases
ATGGTTGCTCGCCTTTCCTTGCACTCTGCTTACCCCAGTACCCTGCCACGCCGCACCCTGCTCGCTTCCCTGTTGCTGGT
TTGCTGTCAGGGCGTCGCCACTGCAGCCACCGTCAAACTGGAAAATATTCGCGGTTACGGTTTTGATGATGAACGTCAGT
TGGTCACCTTCGACACCCTCGCCTATGACGATGTCACCGGCAAGGTGCTGGCACGGGGCAAGGAGGCGCAGTCGCTGACC
ACAGACCAGGTGCACAATGGTGCGGGGAAGACGCTGTTGCCGGGGCTTATCGACGGTCACGGCCATGTGCTGGGACTGGG
CCAGGGCCTGAGCCAGGTTGAACTGCGGGAGACTCGCACCGAAGCCGCTGCTGCCAGTCTGGTAAGCAGCTTTGCCCAGG
CTCATCGCGAGCAGCGCTGGATATTGGGGCGGGGCTGGAATCAGGAACTCTGGGACAGCCGCGCCTATCCAACCAAGGCC
TCGCTGGATGCCCTGATAAACGACAGACCCGTTTGGCTACGCCGTGTTGACGGCCACGCAGGTTGGGCCAACAGCAAGGC
CCTTGCCCTGGCGGGCATAGGCCGGGACACACTGGACCCGGATGGGGGTCAAATCATCAAGGATGCCAAGGGTGAACCCA
CGGGCGTGTTGGTGGATAACGCCATGGCGCTGCTGGAAAACCAGATCCCCGAGCCCGCAAAAGCAGAACGACTTGCCGCC
TTTACCACCGCCTTTGACCACCTGCTCTCCCTCGGTATCACAGCCACCCATGATGCGGGCATCAGCGCCGCCGAGCTGGC
CGATTATCAGGATTTGCGCCAACAACAGCGGTTACCGGTGCGGATATATGCCATGCTGTCCGCCGCCGATCCGGCGCTGG
ATTCCTGGCTGAAGCAGGGCCCGATTCTGGATGAAGACGAGCGACTGGTGGCCCGCTCGGTGAAAATTTACAGCGATGGC
GCACTTGGCAGCCGCGGAGCGGCGCTGCTGGCCCCATACAGTGACAGACCCGGTGAAACCGGGCTGCTGGTCACGCCGGA
GCCTGAGCTGGGAAGCCTGATAAAAGCCACGGTTGCCGCTGGCTTTCAGGCCAATGTGCATGCCATTGGTGACAGGGCCA
ATCGCATGGTGCTGGATAAATTTGCCCAGCTGGATGACAAAACCCGCGAGGCCGGGCGTCATCGCATCGAACACGCCCAA
ATCATCGACCCCAAGGATTTGCCCCGCTTCGCCACGCTCAAGGTATTGCCCTCCATGCAACCCACCCATGCCACCTCCGA
CATGAACATGGCCGGAGATCGCCTCGGTGAGCAGCGTCTGCGCGGTGCCTATGCCTGGCGTACCCTGGTGGATATGGGCA
GTCCCATCGTTGGCGGCTCCGACTTCCCGGTGGAGCTGGCCAATCCTTTCCACGGCCTCCATGCCGCCGTGACCCGCCAG
GATCAACGCAATCTGCCCGAAGGTGGCTGGCGCCCGGCAGAAAAGCTGACCCTGGCAGAGGCTCTGCGCGCCTTTACCCG
GGATGCGGCCTATGGCGCCTTTCAGGAGCAAAAAATGGGCAGCCTGACACCGGGCAGCTTTGCCGATTTTATTCTGGTGG
ACAGAGATATATTCGCCATCGTGCCTGAGCAGCTATGGCAAACCCGGGTGCTTGAGACCCATGTGGCGGGTAAACAGGTC
TATGCTTTGGGACAATAA

Upstream 100 bases:

>100_bases
GCCTTTTTTATGCCATGAATGGGGTGACTCTGACGAAGGAGCAATGCTATAACCTTAAAAAATAACAAACTTTAAACATC
TTACTGCACAAGGACTCCCC

Downstream 100 bases:

>100_bases
GACAAAGGCCCGGCACGCTTATGCCGGGCTCAACCTCAAATGTCGGTTTCAGCACTGAGTTATGGGTTCTTTGGGAGGCG
CAGTGTGGGTTATCATCAAC

Product: metal-dependent amidohydrolase with the TIM-barrel fold

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MVARLSLHSAYPSTLPRRTLLASLLLVCCQGVATAATVKLENIRGYGFDDERQLVTFDTLAYDDVTGKVLARGKEAQSLT
TDQVHNGAGKTLLPGLIDGHGHVLGLGQGLSQVELRETRTEAAAASLVSSFAQAHREQRWILGRGWNQELWDSRAYPTKA
SLDALINDRPVWLRRVDGHAGWANSKALALAGIGRDTLDPDGGQIIKDAKGEPTGVLVDNAMALLENQIPEPAKAERLAA
FTTAFDHLLSLGITATHDAGISAAELADYQDLRQQQRLPVRIYAMLSAADPALDSWLKQGPILDEDERLVARSVKIYSDG
ALGSRGAALLAPYSDRPGETGLLVTPEPELGSLIKATVAAGFQANVHAIGDRANRMVLDKFAQLDDKTREAGRHRIEHAQ
IIDPKDLPRFATLKVLPSMQPTHATSDMNMAGDRLGEQRLRGAYAWRTLVDMGSPIVGGSDFPVELANPFHGLHAAVTRQ
DQRNLPEGGWRPAEKLTLAEALRAFTRDAAYGAFQEQKMGSLTPGSFADFILVDRDIFAIVPEQLWQTRVLETHVAGKQV
YALGQ

Sequences:

>Translated_565_residues
MVARLSLHSAYPSTLPRRTLLASLLLVCCQGVATAATVKLENIRGYGFDDERQLVTFDTLAYDDVTGKVLARGKEAQSLT
TDQVHNGAGKTLLPGLIDGHGHVLGLGQGLSQVELRETRTEAAAASLVSSFAQAHREQRWILGRGWNQELWDSRAYPTKA
SLDALINDRPVWLRRVDGHAGWANSKALALAGIGRDTLDPDGGQIIKDAKGEPTGVLVDNAMALLENQIPEPAKAERLAA
FTTAFDHLLSLGITATHDAGISAAELADYQDLRQQQRLPVRIYAMLSAADPALDSWLKQGPILDEDERLVARSVKIYSDG
ALGSRGAALLAPYSDRPGETGLLVTPEPELGSLIKATVAAGFQANVHAIGDRANRMVLDKFAQLDDKTREAGRHRIEHAQ
IIDPKDLPRFATLKVLPSMQPTHATSDMNMAGDRLGEQRLRGAYAWRTLVDMGSPIVGGSDFPVELANPFHGLHAAVTRQ
DQRNLPEGGWRPAEKLTLAEALRAFTRDAAYGAFQEQKMGSLTPGSFADFILVDRDIFAIVPEQLWQTRVLETHVAGKQV
YALGQ
>Mature_565_residues
MVARLSLHSAYPSTLPRRTLLASLLLVCCQGVATAATVKLENIRGYGFDDERQLVTFDTLAYDDVTGKVLARGKEAQSLT
TDQVHNGAGKTLLPGLIDGHGHVLGLGQGLSQVELRETRTEAAAASLVSSFAQAHREQRWILGRGWNQELWDSRAYPTKA
SLDALINDRPVWLRRVDGHAGWANSKALALAGIGRDTLDPDGGQIIKDAKGEPTGVLVDNAMALLENQIPEPAKAERLAA
FTTAFDHLLSLGITATHDAGISAAELADYQDLRQQQRLPVRIYAMLSAADPALDSWLKQGPILDEDERLVARSVKIYSDG
ALGSRGAALLAPYSDRPGETGLLVTPEPELGSLIKATVAAGFQANVHAIGDRANRMVLDKFAQLDDKTREAGRHRIEHAQ
IIDPKDLPRFATLKVLPSMQPTHATSDMNMAGDRLGEQRLRGAYAWRTLVDMGSPIVGGSDFPVELANPFHGLHAAVTRQ
DQRNLPEGGWRPAEKLTLAEALRAFTRDAAYGAFQEQKMGSLTPGSFADFILVDRDIFAIVPEQLWQTRVLETHVAGKQV
YALGQ

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 61347; Mature: 61347

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVARLSLHSAYPSTLPRRTLLASLLLVCCQGVATAATVKLENIRGYGFDDERQLVTFDTL
CCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCEEEEEEEE
AYDDVTGKVLARGKEAQSLTTDQVHNGAGKTLLPGLIDGHGHVLGLGQGLSQVELRETRT
EECCCCHHHHHCCCHHHCCCHHHHHCCCCCCCCCHHCCCCCCEEECCCCCCHHHHHHHHH
EAAAASLVSSFAQAHREQRWILGRGWNQELWDSRAYPTKASLDALINDRPVWLRRVDGHA
HHHHHHHHHHHHHHHHHCCEEECCCCCHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCC
GWANSKALALAGIGRDTLDPDGGQIIKDAKGEPTGVLVDNAMALLENQIPEPAKAERLAA
CCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHH
FTTAFDHLLSLGITATHDAGISAAELADYQDLRQQQRLPVRIYAMLSAADPALDSWLKQG
HHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHHC
PILDEDERLVARSVKIYSDGALGSRGAALLAPYSDRPGETGLLVTPEPELGSLIKATVAA
CCCCCCHHHHHHHEEEEECCCCCCCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHC
GFQANVHAIGDRANRMVLDKFAQLDDKTREAGRHRIEHAQIIDPKDLPRFATLKVLPSMQ
CCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEECCCCC
PTHATSDMNMAGDRLGEQRLRGAYAWRTLVDMGSPIVGGSDFPVELANPFHGLHAAVTRQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHH
DQRNLPEGGWRPAEKLTLAEALRAFTRDAAYGAFQEQKMGSLTPGSFADFILVDRDIFAI
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEEEECCHHHHH
VPEQLWQTRVLETHVAGKQVYALGQ
CHHHHHHHHHHHHHHCCCEEEECCC
>Mature Secondary Structure
MVARLSLHSAYPSTLPRRTLLASLLLVCCQGVATAATVKLENIRGYGFDDERQLVTFDTL
CCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCEEEEEEEE
AYDDVTGKVLARGKEAQSLTTDQVHNGAGKTLLPGLIDGHGHVLGLGQGLSQVELRETRT
EECCCCHHHHHCCCHHHCCCHHHHHCCCCCCCCCHHCCCCCCEEECCCCCCHHHHHHHHH
EAAAASLVSSFAQAHREQRWILGRGWNQELWDSRAYPTKASLDALINDRPVWLRRVDGHA
HHHHHHHHHHHHHHHHHCCEEECCCCCHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCC
GWANSKALALAGIGRDTLDPDGGQIIKDAKGEPTGVLVDNAMALLENQIPEPAKAERLAA
CCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHH
FTTAFDHLLSLGITATHDAGISAAELADYQDLRQQQRLPVRIYAMLSAADPALDSWLKQG
HHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHHC
PILDEDERLVARSVKIYSDGALGSRGAALLAPYSDRPGETGLLVTPEPELGSLIKATVAA
CCCCCCHHHHHHHEEEEECCCCCCCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHC
GFQANVHAIGDRANRMVLDKFAQLDDKTREAGRHRIEHAQIIDPKDLPRFATLKVLPSMQ
CCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEECCCCC
PTHATSDMNMAGDRLGEQRLRGAYAWRTLVDMGSPIVGGSDFPVELANPFHGLHAAVTRQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHH
DQRNLPEGGWRPAEKLTLAEALRAFTRDAAYGAFQEQKMGSLTPGSFADFILVDRDIFAI
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEEEECCHHHHH
VPEQLWQTRVLETHVAGKQVYALGQ
CHHHHHHHHHHHHHHCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]