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The map label for this gene is petB [H]

Identifier: 119776152

GI number: 119776152

Start: 3594125

End: 3595339

Strand: Reverse

Name: petB [H]

Synonym: Sama_3020

Alternate gene names: 119776152

Gene position: 3595339-3594125 (Counterclockwise)

Preceding gene: 119776153

Following gene: 119776151

Centisome position: 83.49

GC content: 51.77

Gene sequence:

>1215_bases
ATGGTTAAGAACATTATCGATTGGATCGATGCCCGTATCCCAATGACGGCGACCTATAATCGTCATGTTGGTCAGTACGC
GACCCCAAAGAACTTTAACTTCTGGTACTTCTTCGGTTCGCTGGCACTGTTGGTGCTGGTAAACCAGATCCTCACCGGTA
TCTGGCTGACCATGAACTACGTACCTACCGCAGAAGGCGCCTTCGCCTCCATTGAATACATCATGCGCGATGTGGAATAT
GGTTGGTTGTTGCGTTATATGCACTCCACAGGGGCCTCTGCATTCTTCGTGGTGGTATATCTGCACATGTTCCGTGGTCT
TATCTACGGTTCATACCAGAAACCACGTGAACTGCTGTGGCTGTTCGGTATGCTGATTTTCCTCGTGCTGATGGCCGAAG
CCTTCATGGGCTATCTGCTGCCATGGGGCCAGATGTCATACTGGGGTGCGCAGGTAATTATCTCTCTGTTTGGTGCCATC
CCTGTTATTGGTGATGATCTGACTCTGTGGATCCGTGGTGACTACGTGGTATCAGGCGCGACCCTGAACCGCTTCTTCGC
CCTGCACGTGATTGCACTGCCGTTGGTGCTGGTTGTTCTGGTGTTCCTGCACCTGATTGCCCTGCACGAAGTGGGTTCAA
ACAACCCCGACGGTATCGAAATCAAGAAGAACAAGGACGAAAACGGCTGGCCCGTTGACGGTATTCCTTTCCACCCTTAC
TACACCGTGAAAGACATCATGGGTGTGGCGGGCTTCCTGATAGTGTTCTGCTACGTGTTGTTCTTCATGCCAGAAGGTGG
TGGTTACTTCCTCGAGAAGCCTAACTTCGAAGCTGCTAACCCAATGAAGACCCCTGAGCACATTGCACCTGTATGGTACT
TCACCCCCTTCTACGCGATTCTGCGTGCGGTTCCGCACAAGCTGGGTGGCGTGATCATGATGGGTCTGTCGATTGCCGTA
CTGTTCCTGCTGCCATGGCTGGATCGTTGTAAGGTGAAGTCAGTTCGCTATCGCAGCATGATCCACAAGCTGAACATTGC
TCAGTTCTCTGTGTCTTTCGTCGTACTGGGCTACCTCGGTGCCGTGCCAGCTTCACCAGCACTGACCATTGCTGCTCAAG
TGTTCACCATCACCTATTTTGGCTTCTTCGTAGCCCTGTGGGTGTACAGCAAGAATGAGAAGACCAAGCCAGTTCCAGCG
AGGTTGACTAAATAA

Upstream 100 bases:

>100_bases
TATTCCAGGGTGTTCCTGCACCACTGAACCTGGTGATCCCTCCACACCAGTATCTTGACGATGCGAATGTGATCATCGGT
GTCGACGGGGAGACTGCATA

Downstream 100 bases:

>100_bases
TGAAAAAGTTACTCATTGCTTTGGTTGCTCTGGTGCCCACTCTTGGCTTCGCCGCTGGCGGCCACAACGTGCACCTGGAA
AAGGCCAATATCGATCTGAA

Product: ubiquinol-cytochrome c reductase, cytochrome b

Products: Q; ferrocytochrome c

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MVKNIIDWIDARIPMTATYNRHVGQYATPKNFNFWYFFGSLALLVLVNQILTGIWLTMNYVPTAEGAFASIEYIMRDVEY
GWLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLWLFGMLIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAI
PVIGDDLTLWIRGDYVVSGATLNRFFALHVIALPLVLVVLVFLHLIALHEVGSNNPDGIEIKKNKDENGWPVDGIPFHPY
YTVKDIMGVAGFLIVFCYVLFFMPEGGGYFLEKPNFEAANPMKTPEHIAPVWYFTPFYAILRAVPHKLGGVIMMGLSIAV
LFLLPWLDRCKVKSVRYRSMIHKLNIAQFSVSFVVLGYLGAVPASPALTIAAQVFTITYFGFFVALWVYSKNEKTKPVPA
RLTK

Sequences:

>Translated_404_residues
MVKNIIDWIDARIPMTATYNRHVGQYATPKNFNFWYFFGSLALLVLVNQILTGIWLTMNYVPTAEGAFASIEYIMRDVEY
GWLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLWLFGMLIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAI
PVIGDDLTLWIRGDYVVSGATLNRFFALHVIALPLVLVVLVFLHLIALHEVGSNNPDGIEIKKNKDENGWPVDGIPFHPY
YTVKDIMGVAGFLIVFCYVLFFMPEGGGYFLEKPNFEAANPMKTPEHIAPVWYFTPFYAILRAVPHKLGGVIMMGLSIAV
LFLLPWLDRCKVKSVRYRSMIHKLNIAQFSVSFVVLGYLGAVPASPALTIAAQVFTITYFGFFVALWVYSKNEKTKPVPA
RLTK
>Mature_404_residues
MVKNIIDWIDARIPMTATYNRHVGQYATPKNFNFWYFFGSLALLVLVNQILTGIWLTMNYVPTAEGAFASIEYIMRDVEY
GWLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLWLFGMLIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAI
PVIGDDLTLWIRGDYVVSGATLNRFFALHVIALPLVLVVLVFLHLIALHEVGSNNPDGIEIKKNKDENGWPVDGIPFHPY
YTVKDIMGVAGFLIVFCYVLFFMPEGGGYFLEKPNFEAANPMKTPEHIAPVWYFTPFYAILRAVPHKLGGVIMMGLSIAV
LFLLPWLDRCKVKSVRYRSMIHKLNIAQFSVSFVVLGYLGAVPASPALTIAAQVFTITYFGFFVALWVYSKNEKTKPVPA
RLTK

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=367, Percent_Identity=44.6866485013624, Blast_Score=279, Evalue=3e-75,
Organism=Saccharomyces cerevisiae, GI6226529, Length=365, Percent_Identity=42.1917808219178, Blast_Score=268, Evalue=1e-72,
Organism=Saccharomyces cerevisiae, GI6226532, Length=249, Percent_Identity=44.1767068273092, Blast_Score=205, Evalue=1e-53,
Organism=Saccharomyces cerevisiae, GI6226531, Length=154, Percent_Identity=49.3506493506493, Blast_Score=148, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6226530, Length=145, Percent_Identity=46.8965517241379, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00033 Cytochrom_B_N [H]

EC number: 1.10.2.2

Molecular weight: Translated: 45863; Mature: 45863

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKNIIDWIDARIPMTATYNRHVGQYATPKNFNFWYFFGSLALLVLVNQILTGIWLTMNY
CCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHEEC
VPTAEGAFASIEYIMRDVEYGWLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LFGMLIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVIGDDLTLWIRGDYVVSGA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCEEEEEECCEEEECH
TLNRFFALHVIALPLVLVVLVFLHLIALHEVGSNNPDGIEIKKNKDENGWPVDGIPFHPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
YTVKDIMGVAGFLIVFCYVLFFMPEGGGYFLEKPNFEAANPMKTPEHIAPVWYFTPFYAI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHH
LRAVPHKLGGVIMMGLSIAVLFLLPWLDRCKVKSVRYRSMIHKLNIAQFSVSFVVLGYLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVPASPALTIAAQVFTITYFGFFVALWVYSKNEKTKPVPARLTK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVKNIIDWIDARIPMTATYNRHVGQYATPKNFNFWYFFGSLALLVLVNQILTGIWLTMNY
CCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHEEC
VPTAEGAFASIEYIMRDVEYGWLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LFGMLIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVIGDDLTLWIRGDYVVSGA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCEEEEEECCEEEECH
TLNRFFALHVIALPLVLVVLVFLHLIALHEVGSNNPDGIEIKKNKDENGWPVDGIPFHPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
YTVKDIMGVAGFLIVFCYVLFFMPEGGGYFLEKPNFEAANPMKTPEHIAPVWYFTPFYAI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHH
LRAVPHKLGGVIMMGLSIAVLFLLPWLDRCKVKSVRYRSMIHKLNIAQFSVSFVVLGYLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVPASPALTIAAQVFTITYFGFFVALWVYSKNEKTKPVPARLTK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: QH2; ferricytochrome c

Specific reaction: QH2 + 2 ferricytochrome c = Q + 2 ferrocytochrome c

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA