| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776047
Identifier: 119776047
GI number: 119776047
Start: 3464523
End: 3465335
Strand: Direct
Name: 119776047
Synonym: Sama_2915
Alternate gene names: NA
Gene position: 3464523-3465335 (Clockwise)
Preceding gene: 119776046
Following gene: 119776048
Centisome position: 80.46
GC content: 54.12
Gene sequence:
>813_bases ATGAAAAACAAAAGTAACCTAGTAACCAGCTTGTTCCTGGCAAGCCTGGGAGCAACAACACAGGTTTCTGCTGAAACCGT CAATGTGGGCGTGAGCTTTGCGATACCGCCCTACGTGATTCAGCAGGAAAACAGCGGTCTGGAGCTGGATATACTGCGCC AGGCGCTGGCCCGCCGGGGACACTATGCGGTGATCCATTACATGCCGCTGTCCCGCACCTTCCGCGAGCTCAAGGACGGT AAGCTCGACGGCATCATCAACACCAAAGAGAATATGCTTGAGGGCGTGTTCTACAGCGATGAAGTCATCCGTTTCCATAA CTGCGTTATCAGCCTTGCCTCCCGCAATCTGGACATCAACACCATTGGCGATTTGAAGGGCATGAGTGTGGTGGCCTTTC AACAGGCGTCGCGGATTCTGGGAGAAGAGTTTGGCAGCACAGTCGCCAAATCGCCGTCTTACAGCGAAATTGCCGCCCAG CGCCATCAAATTCATATGCTGTTCAAGGGCCGAACCGACGTGATAGTCATGGAAAAAAGTATCTTTGCCTACTATCGCAA AAAAGAGCTGGAGGCCGGATTTACGGAGGCCGGGCTTGAGGTTCGTGAGGCCTGCATTTTCGAACCCACGGCCTACCGTT TTGCCTTTCGCTCGGCCCGAATTCGGGATGACTTCAATCAGGGCCTGAGTTCAATACGGGAAGACGGCACCCTTGCCGCC ATCTTGCAAAAATACAAGGCCATGATGACGGTGGAACCCGAAGAAGAGCCCTCCATAGACGAGATGCTGCAAGCCCAGCC GGAGCACCCCTGA
Upstream 100 bases:
>100_bases ACAGGGAGTGAACTAAACTCAATACTGACTCGACAACCCAAGACGGCCCGCCGACAGAGCGACTAAACAATAAAGCCGTC TCCCTGAGAACTTAGTTAAA
Downstream 100 bases:
>100_bases CATCAGGGCTTAAGCCGTCTCTTAGACTAAAATCCAGCACATTTCCCGGGGCACACATCTTGTGGCGCCCCGGGGGAATG GCTATCTTGTCTGCCCCTGT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: ABC-Type Amino Acid Transport/Signal Transduction Systems; Amino Acid ABC Transporter Periplasmic Protein; ABC Polar Amino Acid Transport System; Amino Acid Transporter; Signal Transduction Histidine Kinase-Like Protein
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MKNKSNLVTSLFLASLGATTQVSAETVNVGVSFAIPPYVIQQENSGLELDILRQALARRGHYAVIHYMPLSRTFRELKDG KLDGIINTKENMLEGVFYSDEVIRFHNCVISLASRNLDINTIGDLKGMSVVAFQQASRILGEEFGSTVAKSPSYSEIAAQ RHQIHMLFKGRTDVIVMEKSIFAYYRKKELEAGFTEAGLEVREACIFEPTAYRFAFRSARIRDDFNQGLSSIREDGTLAA ILQKYKAMMTVEPEEEPSIDEMLQAQPEHP
Sequences:
>Translated_270_residues MKNKSNLVTSLFLASLGATTQVSAETVNVGVSFAIPPYVIQQENSGLELDILRQALARRGHYAVIHYMPLSRTFRELKDG KLDGIINTKENMLEGVFYSDEVIRFHNCVISLASRNLDINTIGDLKGMSVVAFQQASRILGEEFGSTVAKSPSYSEIAAQ RHQIHMLFKGRTDVIVMEKSIFAYYRKKELEAGFTEAGLEVREACIFEPTAYRFAFRSARIRDDFNQGLSSIREDGTLAA ILQKYKAMMTVEPEEEPSIDEMLQAQPEHP >Mature_270_residues MKNKSNLVTSLFLASLGATTQVSAETVNVGVSFAIPPYVIQQENSGLELDILRQALARRGHYAVIHYMPLSRTFRELKDG KLDGIINTKENMLEGVFYSDEVIRFHNCVISLASRNLDINTIGDLKGMSVVAFQQASRILGEEFGSTVAKSPSYSEIAAQ RHQIHMLFKGRTDVIVMEKSIFAYYRKKELEAGFTEAGLEVREACIFEPTAYRFAFRSARIRDDFNQGLSSIREDGTLAA ILQKYKAMMTVEPEEEPSIDEMLQAQPEHP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30309; Mature: 30309
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNKSNLVTSLFLASLGATTQVSAETVNVGVSFAIPPYVIQQENSGLELDILRQALARRG CCCHHHHHHHHHHHHCCCCCEECCEEEEECEEECCCCEEEEECCCCCHHHHHHHHHHCCC HYAVIHYMPLSRTFRELKDGKLDGIINTKENMLEGVFYSDEVIRFHNCVISLASRNLDIN CEEEEEECCHHHHHHHHHCCCCCCEECCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCE TIGDLKGMSVVAFQQASRILGEEFGSTVAKSPSYSEIAAQRHQIHMLFKGRTDVIVMEKS ECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEECCCCEEEEHHH IFAYYRKKELEAGFTEAGLEVREACIFEPTAYRFAFRSARIRDDFNQGLSSIREDGTLAA HHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH ILQKYKAMMTVEPEEEPSIDEMLQAQPEHP HHHHHHHHEEECCCCCCCHHHHHHCCCCCC >Mature Secondary Structure MKNKSNLVTSLFLASLGATTQVSAETVNVGVSFAIPPYVIQQENSGLELDILRQALARRG CCCHHHHHHHHHHHHCCCCCEECCEEEEECEEECCCCEEEEECCCCCHHHHHHHHHHCCC HYAVIHYMPLSRTFRELKDGKLDGIINTKENMLEGVFYSDEVIRFHNCVISLASRNLDIN CEEEEEECCHHHHHHHHHCCCCCCEECCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCE TIGDLKGMSVVAFQQASRILGEEFGSTVAKSPSYSEIAAQRHQIHMLFKGRTDVIVMEKS ECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEECCCCEEEEHHH IFAYYRKKELEAGFTEAGLEVREACIFEPTAYRFAFRSARIRDDFNQGLSSIREDGTLAA HHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH ILQKYKAMMTVEPEEEPSIDEMLQAQPEHP HHHHHHHHEEECCCCCCCHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA