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The map label for this gene is ygeA [H]

Identifier: 119776018

GI number: 119776018

Start: 3426623

End: 3427300

Strand: Direct

Name: ygeA [H]

Synonym: Sama_2886

Alternate gene names: 119776018

Gene position: 3426623-3427300 (Clockwise)

Preceding gene: 119776017

Following gene: 119776019

Centisome position: 79.58

GC content: 48.82

Gene sequence:

>678_bases
TTGCTGGGCGGCATGAGCTGGGAATCCAGTCTCAACTACTACAAAGCAATCAACGAAGGTGTTAAAGCCAGACTCGGTGG
TCTGCACTCTGCAAAAATTTTGATGTATTCAGTTAACTTTGCCGAGATAGAGCAACTCCAGCATCAAGGAGATTGGTCAA
CATGTGCCACGATTCTGACTGACGCTGCCAAATCCATAGAGTCCGCAGGGGCAGACTTTCTGCTTATATGCACCAATACT
ATGCACAAGGTAGCACCAGAGATTGATGCCAATATAGGCATTCCCATTCTGCATATTGCCGATGCAACAGCGGAGCGGCT
TAAATCGGACGGAATTGACAGAGTCGGGTTACTGGGCACCCGCTTCACCATGGAACAGGACTTCTACAAATCCCGGCTAA
TCGAGCGCTATGGCATCGAAGTACTGGTGCCAAATGCGGCTGAGCGAGAACTTGTGCACGATGTGATTTATAACGAACTC
TGTCTTGGCAAGATAAAACCAAAATCCCGCGAGGTGTATCTGGCCATCATTGACTCGCTTGCGAATGCTGGTGCCGAAGC
CATCATCCTCGGCTGCACCGAAATCGCCCTTTTGGTAGAGCAGAACCACACTCACATCAAACTATACGACACAACCCAAA
TACATGCAGAGCAAGCAGTAGCTAAGGCGCTTGAATAA

Upstream 100 bases:

>100_bases
CGACCGAGTGGTGTAATACCGACAGCTGGCAAAGTCCCAAGTTTGGTGGTTCTGTCATAAATTTCTGCAACGAGAGGAAA
ATCAAATCAAAACCATCGGC

Downstream 100 bases:

>100_bases
AATAGGTGCGATACATGGTTAACTTAAATGGAGTGCTGAATATCAGCAATCTCTCTCGAGCTTTGTTAATTAGGATATTG
TTTTTCAGCGGATTCTTTAC

Product: hypothetical protein

Products: D-aspartate

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MLGGMSWESSLNYYKAINEGVKARLGGLHSAKILMYSVNFAEIEQLQHQGDWSTCATILTDAAKSIESAGADFLLICTNT
MHKVAPEIDANIGIPILHIADATAERLKSDGIDRVGLLGTRFTMEQDFYKSRLIERYGIEVLVPNAAERELVHDVIYNEL
CLGKIKPKSREVYLAIIDSLANAGAEAIILGCTEIALLVEQNHTHIKLYDTTQIHAEQAVAKALE

Sequences:

>Translated_225_residues
MLGGMSWESSLNYYKAINEGVKARLGGLHSAKILMYSVNFAEIEQLQHQGDWSTCATILTDAAKSIESAGADFLLICTNT
MHKVAPEIDANIGIPILHIADATAERLKSDGIDRVGLLGTRFTMEQDFYKSRLIERYGIEVLVPNAAERELVHDVIYNEL
CLGKIKPKSREVYLAIIDSLANAGAEAIILGCTEIALLVEQNHTHIKLYDTTQIHAEQAVAKALE
>Mature_225_residues
MLGGMSWESSLNYYKAINEGVKARLGGLHSAKILMYSVNFAEIEQLQHQGDWSTCATILTDAAKSIESAGADFLLICTNT
MHKVAPEIDANIGIPILHIADATAERLKSDGIDRVGLLGTRFTMEQDFYKSRLIERYGIEVLVPNAAERELVHDVIYNEL
CLGKIKPKSREVYLAIIDSLANAGAEAIILGCTEIALLVEQNHTHIKLYDTTQIHAEQAVAKALE

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=224, Percent_Identity=50.8928571428571, Blast_Score=247, Evalue=4e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: 5.1.1.13

Molecular weight: Translated: 24754; Mature: 24754

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGGMSWESSLNYYKAINEGVKARLGGLHSAKILMYSVNFAEIEQLQHQGDWSTCATILT
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHCCCHHHHHHHHH
DAAKSIESAGADFLLICTNTMHKVAPEIDANIGIPILHIADATAERLKSDGIDRVGLLGT
HHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCHHHCCC
RFTMEQDFYKSRLIERYGIEVLVPNAAERELVHDVIYNELCLGKIKPKSREVYLAIIDSL
EEHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
ANAGAEAIILGCTEIALLVEQNHTHIKLYDTTQIHAEQAVAKALE
HCCCCCEEEEEHHHEEEEEECCCCEEEEEECHHHHHHHHHHHHCC
>Mature Secondary Structure
MLGGMSWESSLNYYKAINEGVKARLGGLHSAKILMYSVNFAEIEQLQHQGDWSTCATILT
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHCCCHHHHHHHHH
DAAKSIESAGADFLLICTNTMHKVAPEIDANIGIPILHIADATAERLKSDGIDRVGLLGT
HHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCHHHCCC
RFTMEQDFYKSRLIERYGIEVLVPNAAERELVHDVIYNELCLGKIKPKSREVYLAIIDSL
EEHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
ANAGAEAIILGCTEIALLVEQNHTHIKLYDTTQIHAEQAVAKALE
HCCCCCEEEEEHHHEEEEEECCCCEEEEEECHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-aspartate

Specific reaction: L-aspartate = D-aspartate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]