Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775983

Identifier: 119775983

GI number: 119775983

Start: 3390084

End: 3391622

Strand: Direct

Name: 119775983

Synonym: Sama_2851

Alternate gene names: NA

Gene position: 3390084-3391622 (Clockwise)

Preceding gene: 119775982

Following gene: 119775987

Centisome position: 78.73

GC content: 54.45

Gene sequence:

>1539_bases
ATGAGTCAACCAACGAATCTTTCGGGCAACGACCTCAGCGAAGTCAAACAGCTCGGTATGTGGGCCTCCATCATGAGCCT
GGGCTACATTTTCTGGCTGGTGGGCGGCATGGAGCTGGTGGAGCGCATTGCCTATTACGGCGTGAAGGCCAGTGCCGGCC
TCTATGCCAAGGCGCCCGAATCCCAGGGTGGCCTGGGTATTTCCCTTTCTGACTACGGCATCATTATCTCGACCTGGGCG
ATACTGCAAACCTTTATCCCGGTGTTTACCGGCGGTATCTCCGACCGGGTGGGCTACAAAGAAACCATCTTCGCCTCCAC
CATCATTAAAATTGCCGGCTACCTGTGTATGGCCTTTTTCCCCAGCTTCTGGGGCTTTTTGGCAGGCGCCATGCTGCTGG
CTGCCGGTACGGGTATCTTCAAGCCCGGTATTCAGGGCACCCTGGTACTGGCAACCCGCCGCGACAACAGTTCCATGGCC
TGGGGGATTTTCTATCAGGTGGTGAATATCGGCGGCTTCCTCGGCCCCCTGGTTGCCGTGCATATGCGCCAACTCTCCTG
GGACAATGTGTTTTACGCCTGCGCCGCGATTATCTCGCTTAACTTTCTGTTTTTGCTTACCTATAAAGAGCCCGGCAAAG
AAGCACGTCTGGAGCGCCAGCGCAAAATCAAGGCGGGCGATCTGAAGCAGGACTTCCTGTGGAAAGACGCCTGGAATGAG
CTGAAAAAGCCGGTGGTGATTTACTACATGCTGGTATTTGCCGGTTTCTGGTTTTTGTTCAACTCCCTCTTCGATGTGCT
GCCCATTCACATTGCCGAATGGGTGGATACCAGCGTGATTGTTTCGACCCTGTTTGGCGAAGAAGGTACCCGCAACGGCA
TTTTGCAGTTCTGGCTGGGACTGAATAACGAAGGCACCAAGGTGATGCCGGAAGGCATGCTGAACCTGAACGCGGGCCTG
ATTATGACCAGCTGCTTTTTGGTGGCGGCCCTGACTGCCAAGTACCGCATCACCACTGCCATGCTGTGGGGCTGCCTCCT
GTCTATCGGTGCCTTTGTGATGATTGGTGCCACCCACGCCGCCTGGTATATAGTGCTGGCGATTGCCATGTTCTCTTTGG
GTGAAATGATGATAAGCCCCAAAAAGAACGAGTTTATGGGCAATATCGCCCCCGAAGGCAAAAAGGCCATGTACCTGGGC
TTTGTAATGCTGCCACAGGGCATAGGCTGGGGTCTTGAGGGATATTTTGGTCCCAAGTTGTATGAGATGTATGCCTCAAA
AGAGAAATTCGCCCGTCAGATGCTGGGAGAAGAAGGCATGAGCAGCGCCGATGTGGCCGCTATTCCCCAGGGTGAAGCCT
TTACCCGACTGGTGGAATTTACCGGCCGCGGCAGCCGTGAGCTGACCGAAGTTCTCTATAACGCCCACAATATCGGTATG
GCCTGGTACATCATTGCCGCCATTGGCACCCTCTCCGCGGTGGGTATTTTTATCTACGGCAAGTGGCTGTTTAAGATGCA
GCAACAAAATCCGGCGTAA

Upstream 100 bases:

>100_bases
CTGTAAAGTGGCCCTGCCGGTGGCAGACTCCCCCGGTGGCAGCGCTATTTGAACGTACAATAGCCGACGATAACAACAAT
GACAGGATGAAAGACGGACT

Downstream 100 bases:

>100_bases
ATCTGCCGTCAATAAAAGTTCAGTAATAAAAAAAGCTGCCATCGGCAGCTTTTTTTATTGGGATAAACCTTAGCCCGCGT
ATTTCTTCAGCCACTTGGCA

Product: transporter

Products: NA

Alternate protein names: Facilitator Superfamily Permease

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MSQPTNLSGNDLSEVKQLGMWASIMSLGYIFWLVGGMELVERIAYYGVKASAGLYAKAPESQGGLGISLSDYGIIISTWA
ILQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLCMAFFPSFWGFLAGAMLLAAGTGIFKPGIQGTLVLATRRDNSSMA
WGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLTYKEPGKEARLERQRKIKAGDLKQDFLWKDAWNE
LKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVSTLFGEEGTRNGILQFWLGLNNEGTKVMPEGMLNLNAGL
IMTSCFLVAALTAKYRITTAMLWGCLLSIGAFVMIGATHAAWYIVLAIAMFSLGEMMISPKKNEFMGNIAPEGKKAMYLG
FVMLPQGIGWGLEGYFGPKLYEMYASKEKFARQMLGEEGMSSADVAAIPQGEAFTRLVEFTGRGSRELTEVLYNAHNIGM
AWYIIAAIGTLSAVGIFIYGKWLFKMQQQNPA

Sequences:

>Translated_512_residues
MSQPTNLSGNDLSEVKQLGMWASIMSLGYIFWLVGGMELVERIAYYGVKASAGLYAKAPESQGGLGISLSDYGIIISTWA
ILQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLCMAFFPSFWGFLAGAMLLAAGTGIFKPGIQGTLVLATRRDNSSMA
WGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLTYKEPGKEARLERQRKIKAGDLKQDFLWKDAWNE
LKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVSTLFGEEGTRNGILQFWLGLNNEGTKVMPEGMLNLNAGL
IMTSCFLVAALTAKYRITTAMLWGCLLSIGAFVMIGATHAAWYIVLAIAMFSLGEMMISPKKNEFMGNIAPEGKKAMYLG
FVMLPQGIGWGLEGYFGPKLYEMYASKEKFARQMLGEEGMSSADVAAIPQGEAFTRLVEFTGRGSRELTEVLYNAHNIGM
AWYIIAAIGTLSAVGIFIYGKWLFKMQQQNPA
>Mature_511_residues
SQPTNLSGNDLSEVKQLGMWASIMSLGYIFWLVGGMELVERIAYYGVKASAGLYAKAPESQGGLGISLSDYGIIISTWAI
LQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLCMAFFPSFWGFLAGAMLLAAGTGIFKPGIQGTLVLATRRDNSSMAW
GIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLTYKEPGKEARLERQRKIKAGDLKQDFLWKDAWNEL
KKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVSTLFGEEGTRNGILQFWLGLNNEGTKVMPEGMLNLNAGLI
MTSCFLVAALTAKYRITTAMLWGCLLSIGAFVMIGATHAAWYIVLAIAMFSLGEMMISPKKNEFMGNIAPEGKKAMYLGF
VMLPQGIGWGLEGYFGPKLYEMYASKEKFARQMLGEEGMSSADVAAIPQGEAFTRLVEFTGRGSRELTEVLYNAHNIGMA
WYIIAAIGTLSAVGIFIYGKWLFKMQQQNPA

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56546; Mature: 56415

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPTNLSGNDLSEVKQLGMWASIMSLGYIFWLVGGMELVERIAYYGVKASAGLYAKAPE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
SQGGLGISLSDYGIIISTWAILQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLCMAFF
CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
PSFWGFLAGAMLLAAGTGIFKPGIQGTLVLATRRDNSSMAWGIFYQVVNIGGFLGPLVAV
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
HMRQLSWDNVFYACAAIISLNFLFLLTYKEPGKEARLERQRKIKAGDLKQDFLWKDAWNE
HHHHCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVSTLFGEEGTRNGILQFWLG
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEC
LNNEGTKVMPEGMLNLNAGLIMTSCFLVAALTAKYRITTAMLWGCLLSIGAFVMIGATHA
CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AWYIVLAIAMFSLGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWGLEGYFGPKL
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHH
YEMYASKEKFARQMLGEEGMSSADVAAIPQGEAFTRLVEFTGRGSRELTEVLYNAHNIGM
HHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
AWYIIAAIGTLSAVGIFIYGKWLFKMQQQNPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SQPTNLSGNDLSEVKQLGMWASIMSLGYIFWLVGGMELVERIAYYGVKASAGLYAKAPE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
SQGGLGISLSDYGIIISTWAILQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLCMAFF
CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
PSFWGFLAGAMLLAAGTGIFKPGIQGTLVLATRRDNSSMAWGIFYQVVNIGGFLGPLVAV
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
HMRQLSWDNVFYACAAIISLNFLFLLTYKEPGKEARLERQRKIKAGDLKQDFLWKDAWNE
HHHHCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVSTLFGEEGTRNGILQFWLG
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEC
LNNEGTKVMPEGMLNLNAGLIMTSCFLVAALTAKYRITTAMLWGCLLSIGAFVMIGATHA
CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AWYIVLAIAMFSLGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWGLEGYFGPKL
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHH
YEMYASKEKFARQMLGEEGMSSADVAAIPQGEAFTRLVEFTGRGSRELTEVLYNAHNIGM
HHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
AWYIIAAIGTLSAVGIFIYGKWLFKMQQQNPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA