Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775978

Identifier: 119775978

GI number: 119775978

Start: 3385074

End: 3386021

Strand: Direct

Name: 119775978

Synonym: Sama_2846

Alternate gene names: NA

Gene position: 3385074-3386021 (Clockwise)

Preceding gene: 119775977

Following gene: 119775982

Centisome position: 78.61

GC content: 35.34

Gene sequence:

>948_bases
GTGGAAGACTTAAAGCATCAAATAAGAATGCAAGCTACTGCCAATGTGTTTCAAACTATGGGCACGGAAGGTTCTGGGGT
CAAAGTTATCGAACAATTTAAAAGCATGCCTGATGAACTACTAGATATTCTGGGAACAAATGCAGGTATCAAAAAAGAGC
ACTTACCAATATATCGCAAGTTAACTCGAGGCGAAGAAAATGATTTTACTGAAAAGCTTCAGAATTTTAAAGATGAACTG
AAAACAGGAGATATTATCCTTGTAACTGGTACTTCAAACTCCTCAAAGGTATTGGCGAAATTACAAAAAACGGTTTACTC
AAAAGCTCGATCTAGTCATGTTGTAATCGTTCTAGCCGACTTTATATGTATAGATGCAATGCCCAATATCGGTGTTTCTC
TTAAATTAATACCTGAAGTTTTGAATGATGTTCAAGAAGGTTGGCGGATTATTCGATTTAAAGGACTACAAGAGAAAGAC
AGTGAGGTGCTCAGCAAGACATGCGCTTATTATATTGAGCAACCATATATAATTTTGCCAAAAAAGAAACCGGCAAAGAA
ATTCTCATACTGTTCCGAATTAGCACGTAAAGTTTATCTTGATAGCAAAATTAAAAATACTGGGATCCCAAATAATACCA
TTATAAAGCCATGTGATTTCGATAAAATCGCCGATCAAAATAGTCAGTGGCTAGACGTAACAGATTCCGTTAAGCCTTAC
GTAGAGTTCTGTATAGAATATGAAGGGGTCTTAAAGTTCATAGCTAAGAGCTTTACACAAGGCATAGAGCTAAACCGGCA
ACGATTTAGCGAACGAAGAAAAGTTAAAGAAAATGTATCTAAAATGCATAAAGAAGGTGTGATTACCGACTCTGGTGCAG
CTCAGATAAAAAATAAAATAGAGTTACTTGAAAAATCATTAAACTATAAGTTTTGGGATTATCAATAA

Upstream 100 bases:

>100_bases
GTTGCTCAAATTTACTCCGTGGGACTGGCGCGTGGCGCCAGCCCCTTAGCAAAGCGTTAGGCCTCGTTTACTCTAGCATA
GGCGGACAAGGAAAATTTAA

Downstream 100 bases:

>100_bases
GGCCTAACAAGCGCCTCAACAAAGGACGTAAAAAGCTTGGCTTACGCTCCTTCGTCGCGCTAATTATAGCCAAGCATTTT
ACGCCTTTTAGGCGGGCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MEDLKHQIRMQATANVFQTMGTEGSGVKVIEQFKSMPDELLDILGTNAGIKKEHLPIYRKLTRGEENDFTEKLQNFKDEL
KTGDIILVTGTSNSSKVLAKLQKTVYSKARSSHVVIVLADFICIDAMPNIGVSLKLIPEVLNDVQEGWRIIRFKGLQEKD
SEVLSKTCAYYIEQPYIILPKKKPAKKFSYCSELARKVYLDSKIKNTGIPNNTIIKPCDFDKIADQNSQWLDVTDSVKPY
VEFCIEYEGVLKFIAKSFTQGIELNRQRFSERRKVKENVSKMHKEGVITDSGAAQIKNKIELLEKSLNYKFWDYQ

Sequences:

>Translated_315_residues
MEDLKHQIRMQATANVFQTMGTEGSGVKVIEQFKSMPDELLDILGTNAGIKKEHLPIYRKLTRGEENDFTEKLQNFKDEL
KTGDIILVTGTSNSSKVLAKLQKTVYSKARSSHVVIVLADFICIDAMPNIGVSLKLIPEVLNDVQEGWRIIRFKGLQEKD
SEVLSKTCAYYIEQPYIILPKKKPAKKFSYCSELARKVYLDSKIKNTGIPNNTIIKPCDFDKIADQNSQWLDVTDSVKPY
VEFCIEYEGVLKFIAKSFTQGIELNRQRFSERRKVKENVSKMHKEGVITDSGAAQIKNKIELLEKSLNYKFWDYQ
>Mature_315_residues
MEDLKHQIRMQATANVFQTMGTEGSGVKVIEQFKSMPDELLDILGTNAGIKKEHLPIYRKLTRGEENDFTEKLQNFKDEL
KTGDIILVTGTSNSSKVLAKLQKTVYSKARSSHVVIVLADFICIDAMPNIGVSLKLIPEVLNDVQEGWRIIRFKGLQEKD
SEVLSKTCAYYIEQPYIILPKKKPAKKFSYCSELARKVYLDSKIKNTGIPNNTIIKPCDFDKIADQNSQWLDVTDSVKPY
VEFCIEYEGVLKFIAKSFTQGIELNRQRFSERRKVKENVSKMHKEGVITDSGAAQIKNKIELLEKSLNYKFWDYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36047; Mature: 36047

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDLKHQIRMQATANVFQTMGTEGSGVKVIEQFKSMPDELLDILGTNAGIKKEHLPIYRK
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHH
LTRGEENDFTEKLQNFKDELKTGDIILVTGTSNSSKVLAKLQKTVYSKARSSHVVIVLAD
HHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEHH
FICIDAMPNIGVSLKLIPEVLNDVQEGWRIIRFKGLQEKDSEVLSKTCAYYIEQPYIILP
HHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEC
KKKPAKKFSYCSELARKVYLDSKIKNTGIPNNTIIKPCDFDKIADQNSQWLDVTDSVKPY
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHCCCCCEECCCHHHHHH
VEFCIEYEGVLKFIAKSFTQGIELNRQRFSERRKVKENVSKMHKEGVITDSGAAQIKNKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ELLEKSLNYKFWDYQ
HHHHHHCCCCCCCCC
>Mature Secondary Structure
MEDLKHQIRMQATANVFQTMGTEGSGVKVIEQFKSMPDELLDILGTNAGIKKEHLPIYRK
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHH
LTRGEENDFTEKLQNFKDELKTGDIILVTGTSNSSKVLAKLQKTVYSKARSSHVVIVLAD
HHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEHH
FICIDAMPNIGVSLKLIPEVLNDVQEGWRIIRFKGLQEKDSEVLSKTCAYYIEQPYIILP
HHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEC
KKKPAKKFSYCSELARKVYLDSKIKNTGIPNNTIIKPCDFDKIADQNSQWLDVTDSVKPY
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHCCCCCEECCCHHHHHH
VEFCIEYEGVLKFIAKSFTQGIELNRQRFSERRKVKENVSKMHKEGVITDSGAAQIKNKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ELLEKSLNYKFWDYQ
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA