Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775911

Identifier: 119775911

GI number: 119775911

Start: 3321415

End: 3322554

Strand: Direct

Name: 119775911

Synonym: Sama_2779

Alternate gene names: NA

Gene position: 3321415-3322554 (Clockwise)

Preceding gene: 119775910

Following gene: 119775916

Centisome position: 77.13

GC content: 59.04

Gene sequence:

>1140_bases
ATGACCAATCTTCACCGGCGCAGCCTGATAAAAGCCCTCGGCGCCAGCGCCCTCTTATCTGCCCTGCCCACCGGCGTGCT
TGCCGCCAAGTCACTGCGACCACTCTACATAGATGGCCTGTCGTTTTTACCGGACTCTCTGGACGATCTCGCCGCCTCCG
GTCTTTCGGCCTACCTGTGCGATATCTCCGCCATCGAAGAAGTAAAACAGGAAGATGGCACCCTCAACTACAAGCGCACC
TACAACGCCTGCATCAAGTCGATTGCCGACGCCGGAAAACGCGTCAGCGATAACCCGGGGCAGCTGCTGCAGGGGCTTTC
AGCCAAAGACATCAAAAACGCCCGTGAGTCGGGCCGCACCGCGGTCTTTTTTCAAATTCAGGGGGCAGACTGCGTAGAAG
AACGCCTGTCACAGGTGGATGAGTTCTACCAAAAGGGCCTCAGGGTAATGCAGCTCACCCATCACTATGGCAACAGCTTT
GCCGGTGGCGCACTGGACAGCGATGAGCACGGCGGCCTCAATCTCCCCCTGAGCCCCAAGGGCTATGCCCTGGTGGATAA
GCTCAACGACAGCGGCATTCTCATCGACCTGAGTCACTCCAGCCCTCAAACCGCGCTGGACACCATAGCTGCCTCCCGCA
TGCCGGTGGTGCAAAGCCACGGTGCGGCCCGTGCCATCGTCAACCATGCCCGCTGTTCACCGGATCAGGTGATCCGCGCC
ATCGCAGACAGTGGCGGTGTATTCGGGACCTTTATGATGAGCTTTTGGCTGACCACCAGCAGCACTCCCACGGTTGAGCA
CTATCTGGCACAGCTGAAGCACGTGGCCAGGGTGGGAGGTATCGACGCGGTCGCCATTGCCAACGACTATCCCCTGCGCG
GCCAGGAAAACCTGCTCAAACTCAACAATGACAACGCCGAAGGGGTGAAGGAGTATCTGGACTGGTGGCACAGCCTGCGG
GCCAAAAAGGTACTCGGCTTCGACCATGAGCCGGTGCACGTGGTTATCCCCGAACTCAATCACATTGAGCGCATGAGCCG
CATCCACGATGCCCTCAAGGATGCAGGCTTCAGCGCCGCTGACGCCGATAAAATCATGGGCGGCAACTGGCAGCGGGTAT
TGCAGCAGGTACTGGTGTAA

Upstream 100 bases:

>100_bases
TCAGCGCCCTCGGGCTGGAGGGGCAGCTCAGCCCATCACGCACCAATGGCGTGTATGCCCTGGCAAACCGCATCAAAGAA
TTAAGCCGCGAGGATACCCC

Downstream 100 bases:

>100_bases
AGCGCCATGGCGAGGTGGTTGGCGCTACTGAGCAGAGGCGTGCGGTTCTGGGAGATTAACGCCTAAATCAGTTGCGCCGT
AGGCTTCACCTGAATTTTCT

Product: renal dipeptidase family protein

Products: NA

Alternate protein names: ORF X [H]

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MTNLHRRSLIKALGASALLSALPTGVLAAKSLRPLYIDGLSFLPDSLDDLAASGLSAYLCDISAIEEVKQEDGTLNYKRT
YNACIKSIADAGKRVSDNPGQLLQGLSAKDIKNARESGRTAVFFQIQGADCVEERLSQVDEFYQKGLRVMQLTHHYGNSF
AGGALDSDEHGGLNLPLSPKGYALVDKLNDSGILIDLSHSSPQTALDTIAASRMPVVQSHGAARAIVNHARCSPDQVIRA
IADSGGVFGTFMMSFWLTTSSTPTVEHYLAQLKHVARVGGIDAVAIANDYPLRGQENLLKLNNDNAEGVKEYLDWWHSLR
AKKVLGFDHEPVHVVIPELNHIERMSRIHDALKDAGFSAADADKIMGGNWQRVLQQVLV

Sequences:

>Translated_379_residues
MTNLHRRSLIKALGASALLSALPTGVLAAKSLRPLYIDGLSFLPDSLDDLAASGLSAYLCDISAIEEVKQEDGTLNYKRT
YNACIKSIADAGKRVSDNPGQLLQGLSAKDIKNARESGRTAVFFQIQGADCVEERLSQVDEFYQKGLRVMQLTHHYGNSF
AGGALDSDEHGGLNLPLSPKGYALVDKLNDSGILIDLSHSSPQTALDTIAASRMPVVQSHGAARAIVNHARCSPDQVIRA
IADSGGVFGTFMMSFWLTTSSTPTVEHYLAQLKHVARVGGIDAVAIANDYPLRGQENLLKLNNDNAEGVKEYLDWWHSLR
AKKVLGFDHEPVHVVIPELNHIERMSRIHDALKDAGFSAADADKIMGGNWQRVLQQVLV
>Mature_378_residues
TNLHRRSLIKALGASALLSALPTGVLAAKSLRPLYIDGLSFLPDSLDDLAASGLSAYLCDISAIEEVKQEDGTLNYKRTY
NACIKSIADAGKRVSDNPGQLLQGLSAKDIKNARESGRTAVFFQIQGADCVEERLSQVDEFYQKGLRVMQLTHHYGNSFA
GGALDSDEHGGLNLPLSPKGYALVDKLNDSGILIDLSHSSPQTALDTIAASRMPVVQSHGAARAIVNHARCSPDQVIRAI
ADSGGVFGTFMMSFWLTTSSTPTVEHYLAQLKHVARVGGIDAVAIANDYPLRGQENLLKLNNDNAEGVKEYLDWWHSLRA
KKVLGFDHEPVHVVIPELNHIERMSRIHDALKDAGFSAADADKIMGGNWQRVLQQVLV

Specific function: Unknown

COG id: COG2355

COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M19 family [H]

Homologues:

Organism=Homo sapiens, GI189458885, Length=226, Percent_Identity=26.1061946902655, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI4758190, Length=226, Percent_Identity=26.1061946902655, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI11641269, Length=180, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI193211608, Length=175, Percent_Identity=25.7142857142857, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI193211610, Length=175, Percent_Identity=26.8571428571429, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI281362638, Length=188, Percent_Identity=34.0425531914894, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI281362636, Length=188, Percent_Identity=34.0425531914894, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI161083233, Length=187, Percent_Identity=32.620320855615, Blast_Score=101, Evalue=9e-22,
Organism=Drosophila melanogaster, GI221475880, Length=294, Percent_Identity=25.8503401360544, Blast_Score=92, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008257 [H]

Pfam domain/function: PF01244 Peptidase_M19 [H]

EC number: NA

Molecular weight: Translated: 41163; Mature: 41032

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLHRRSLIKALGASALLSALPTGVLAAKSLRPLYIDGLSFLPDSLDDLAASGLSAYLC
CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCEECCHHHCCCCHHHHHHHCHHHHHH
DISAIEEVKQEDGTLNYKRTYNACIKSIADAGKRVSDNPGQLLQGLSAKDIKNARESGRT
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCE
AVFFQIQGADCVEERLSQVDEFYQKGLRVMQLTHHYGNSFAGGALDSDEHGGLNLPLSPK
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
GYALVDKLNDSGILIDLSHSSPQTALDTIAASRMPVVQSHGAARAIVNHARCSPDQVIRA
CCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHCCCHHHHHHH
IADSGGVFGTFMMSFWLTTSSTPTVEHYLAQLKHVARVGGIDAVAIANDYPLRGQENLLK
HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE
LNNDNAEGVKEYLDWWHSLRAKKVLGFDHEPVHVVIPELNHIERMSRIHDALKDAGFSAA
ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC
DADKIMGGNWQRVLQQVLV
CHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure 
TNLHRRSLIKALGASALLSALPTGVLAAKSLRPLYIDGLSFLPDSLDDLAASGLSAYLC
CCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCEECCHHHCCCCHHHHHHHCHHHHHH
DISAIEEVKQEDGTLNYKRTYNACIKSIADAGKRVSDNPGQLLQGLSAKDIKNARESGRT
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCE
AVFFQIQGADCVEERLSQVDEFYQKGLRVMQLTHHYGNSFAGGALDSDEHGGLNLPLSPK
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
GYALVDKLNDSGILIDLSHSSPQTALDTIAASRMPVVQSHGAARAIVNHARCSPDQVIRA
CCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHCCCHHHHHHH
IADSGGVFGTFMMSFWLTTSSTPTVEHYLAQLKHVARVGGIDAVAIANDYPLRGQENLLK
HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE
LNNDNAEGVKEYLDWWHSLRAKKVLGFDHEPVHVVIPELNHIERMSRIHDALKDAGFSAA
ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC
DADKIMGGNWQRVLQQVLV
CHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1313537 [H]