| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775797
Identifier: 119775797
GI number: 119775797
Start: 3191256
End: 3192158
Strand: Direct
Name: 119775797
Synonym: Sama_2665
Alternate gene names: NA
Gene position: 3191256-3192158 (Clockwise)
Preceding gene: 119775796
Following gene: 119775798
Centisome position: 74.11
GC content: 54.82
Gene sequence:
>903_bases ATGATGACACTGTTACAAGACTATGGCCTGACACAAGAACTGTTGCTGATCCTGGCCATCGACCTCACCATCGCCGTCTC GCTGCTGACTGCCATGCGTTATCTGCAGGGGTGGAGCGTCAAGGTCAACAGCAGCCATGAATTGGCTGAGAAAGATAATG CCGCCTTCGGGATCAGCACTGCCGGCGCCGTGCTGGCACTAGGCGTTGTCCTCACAGGCGCTATCACTGGTGCTGCTGCC CCTGACTACCTCACAGAAGCCATCGGCATGGGCGCCTATGGTGTATTTGGTATGCTGCTGATTAAAGTCGGCCGGGTCAT GCACGACAAAATCGCCCTCAACAACATCGACAAAAACAGCCAGATCCTCAAAGGTAATTTGTCGGTAGCACTGGTGGACG CAGCCGCAGCCGTGGCCACTGCCATTATCATTCGCGCCAGTCTACTGTGGGTTGAAGACTTAACTATTAATACCTTTATC GCCATCGGTACGGCTTTTGTGGTGTCGCAGTTGATGCTGGTGCTGCTGACACGGCTTCGTGAAAACCGCTACAGCGCACG TAATCAGGGTGCCTGCATGCAGGAGGCCCTGGCCAAGGGCCATACCGCCCTCGCCATTCGCCACGCAGGACATATGCTGG CCATGGCATTAACCTTCAATGCCGCGAGCCACTTTATTCTGTTTTCGCCAACGGCCTATGTAACCAACCTCCTCGGCTGG CTGTGTTTCTCACTGGTGATGCTGCTGGCGCTCTCTTTGCTACTAAAGCTGGTGAAACTGCTGGTGCTGGCCCGTATAAA CCTCGCCGATGAAATCGAGCGCCAACATAATGTGGGCCTCGCGTCAGTAGAGGTCGCCATCAGTATTGCGATTGCGCTTA TTCTCACCGGACTGATGGCCTAA
Upstream 100 bases:
>100_bases TCCGCTCCAACTATGCCAAGGACAGCAGTTTTCGCGATGCCAAAAACCGCACCAGCCGCAGCACCCGACGTGGCAAGTGA GCCCAGAAATTAAGGATCTG
Downstream 100 bases:
>100_bases GCCATGGCGCTGGCACAGGACCTGCCTCAGCCGTTGACCCCGGCCAAACACCTCGGCCGCCTGGATGATGCGCTGCTATT GGGGATCATGGCGCTTTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MMTLLQDYGLTQELLLILAIDLTIAVSLLTAMRYLQGWSVKVNSSHELAEKDNAAFGISTAGAVLALGVVLTGAITGAAA PDYLTEAIGMGAYGVFGMLLIKVGRVMHDKIALNNIDKNSQILKGNLSVALVDAAAAVATAIIIRASLLWVEDLTINTFI AIGTAFVVSQLMLVLLTRLRENRYSARNQGACMQEALAKGHTALAIRHAGHMLAMALTFNAASHFILFSPTAYVTNLLGW LCFSLVMLLALSLLLKLVKLLVLARINLADEIERQHNVGLASVEVAISIAIALILTGLMA
Sequences:
>Translated_300_residues MMTLLQDYGLTQELLLILAIDLTIAVSLLTAMRYLQGWSVKVNSSHELAEKDNAAFGISTAGAVLALGVVLTGAITGAAA PDYLTEAIGMGAYGVFGMLLIKVGRVMHDKIALNNIDKNSQILKGNLSVALVDAAAAVATAIIIRASLLWVEDLTINTFI AIGTAFVVSQLMLVLLTRLRENRYSARNQGACMQEALAKGHTALAIRHAGHMLAMALTFNAASHFILFSPTAYVTNLLGW LCFSLVMLLALSLLLKLVKLLVLARINLADEIERQHNVGLASVEVAISIAIALILTGLMA >Mature_300_residues MMTLLQDYGLTQELLLILAIDLTIAVSLLTAMRYLQGWSVKVNSSHELAEKDNAAFGISTAGAVLALGVVLTGAITGAAA PDYLTEAIGMGAYGVFGMLLIKVGRVMHDKIALNNIDKNSQILKGNLSVALVDAAAAVATAIIIRASLLWVEDLTINTFI AIGTAFVVSQLMLVLLTRLRENRYSARNQGACMQEALAKGHTALAIRHAGHMLAMALTFNAASHFILFSPTAYVTNLLGW LCFSLVMLLALSLLLKLVKLLVLARINLADEIERQHNVGLASVEVAISIAIALILTGLMA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31950; Mature: 31950
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTLLQDYGLTQELLLILAIDLTIAVSLLTAMRYLQGWSVKVNSSHELAEKDNAAFGIST CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCH AGAVLALGVVLTGAITGAAAPDYLTEAIGMGAYGVFGMLLIKVGRVMHDKIALNNIDKNS HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC QILKGNLSVALVDAAAAVATAIIIRASLLWVEDLTINTFIAIGTAFVVSQLMLVLLTRLR CEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENRYSARNQGACMQEALAKGHTALAIRHAGHMLAMALTFNAASHFILFSPTAYVTNLLGW HHHHCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHH LCFSLVMLLALSLLLKLVKLLVLARINLADEIERQHNVGLASVEVAISIAIALILTGLMA HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MMTLLQDYGLTQELLLILAIDLTIAVSLLTAMRYLQGWSVKVNSSHELAEKDNAAFGIST CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCH AGAVLALGVVLTGAITGAAAPDYLTEAIGMGAYGVFGMLLIKVGRVMHDKIALNNIDKNS HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC QILKGNLSVALVDAAAAVATAIIIRASLLWVEDLTINTFIAIGTAFVVSQLMLVLLTRLR CEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENRYSARNQGACMQEALAKGHTALAIRHAGHMLAMALTFNAASHFILFSPTAYVTNLLGW HHHHCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHH LCFSLVMLLALSLLLKLVKLLVLARINLADEIERQHNVGLASVEVAISIAIALILTGLMA HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA