| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is maeA
Identifier: 119775753
GI number: 119775753
Start: 3138612
End: 3140300
Strand: Direct
Name: maeA
Synonym: Sama_2621
Alternate gene names: 119775753
Gene position: 3138612-3140300 (Clockwise)
Preceding gene: 119775752
Following gene: 119775755
Centisome position: 72.89
GC content: 55.0
Gene sequence:
>1689_bases ATGGACGATAACAAACGCCCGCTCTATTTGCCGTTCGCCGGTCCAGCCATTCTTGAAGCACCGCTCATTAACAAAGGCAG CGCCTTTACCGAAGAAGAGCGGATATTCTTCAACCTTGAAGGCCTGTTACCTTACGCGATTGAAACCATCGAAGAGCAGG CATCAAGGGCCTACGATCAGTTCCGCAGTTTCAACAATGATTTGGATAAGCACATCTACCTGCGCAACATTCAGGACACC AACGAAACCCTGTTTTACCGCCTGGTGCAAAACAACATTGCCGAGATGATGCCCATCATCTACACCCCCACGGTGGGCCT GGCCTGTGAGCGGTTCTCCAAAAACTATCGCCGCAACCGCGGACTGTTTATCTCCTATCCCAACAAGGACAGGATTGACG ACATCCTCAATAACTCCACCCGCCACAAGGTGAAAATCATCGTTGTGACGGACGGCGAGCGGATTCTGGGTCTGGGCGAT CAGGGGATTGGCGGCATGGGCATCCCAATTGGAAAGCTGTCACTGTACACCAGCTGCGGTGGTATCAGCCCGGCCTATAC CCTGCCTATCACCCTGGATGTGGGCACTGACAATCCGCACCTGCTCGAAGACCCCATGTACATGGGCTGGCGCCATCCCC GCATTGGTGGCGAAGAGTACAGCGAGTTTATTGAAGCCTTTATGGAAGCCGTACACCGCCGCTGGCCTGATGTGCTGATT CAGTTTGAAGACTTTGCCCAGAAGAATGCCATGCCAATTCTGGAGCGCTACAAGGACAGATACTGCTGTTTTAACGACGA TATTCAAGGTACGGCTGCGGTGACCGTTGGCTCCTTATTGGCCGCCTGCCAGGCCGCTGGAACCAAGCTCAGTGATCAGC GCATCACCTTCCTGGGTGCAGGCAGCGCCGGTTGCGGTATTGCTGAAGCAATTGTGGCGCAAATGGTATCTGAAGGCATC AGCGATGATCAGGCCCGCAGCCAGGTGTTTATGGTTGACCGCTGGGGTCTGCTGCTGGACAACATGCCTAACCTGCTGCC ATTCCAGCAAAAACTGGCACAGAAAATTGATAACATTAACCACTGGGATGACTTCAGCGACAATGTCTCACTGCTGAACG TCGTGAACAATGCCAAGCCGACGGTACTTATCGGCGTGTCAGGCGCCCCTGGCCTCTTTACTGAAGAGATCATCCGCGCC ATGCACAGCCACTGCGCCCGTCCAATCGTATTCCCGCTGTCCAACCCCACCAGCAGGGTTGAGGCGACACCGAAAGATAT ACTCCACTGGACCAGCGGTCAGGCGTTGGTAGCAACCGGTAGCCCGTTCGAGCCCGTGGTAGTGGACGACGTGACTTACG ATATCGCCCAGTGCAACAACAGCTACATCTTCCCCGGCATTGGTCTTGGGGTGCTGGCGTGCGGAGCCAACCGGGTATCA AACGAGATGCTCATGGCCTCCAGCCGCGCGCTTGCGGAGTGTTCTCCATTGGCAAAAGACGGCTCAGGACCTCTGCTGCC ACCGCTGGAAGAAATTCACGATGTAAGCAAACACATCGCCTTTGCCGTTGCCAAGGTGGCCATTGAACAGGGACATGCGC TGGATACCACTGATGAGCTGCTGATGCAGTCCATCGAGGCCAACTTCTGGTATCCCGAGTACCGCCGTTACAAACGGACC TCGTTCTAA
Upstream 100 bases:
>100_bases CAAAGCTACAAAGATCACATTTCGTGATAATCTTCTTGCTATTGACAGCACATTTCATGCCCAGAAAGCACACACCCAAA AAGCATACAAAAGGTAGCCC
Downstream 100 bases:
>100_bases CAAAAAAGCCCGGCATAGCCGGGCTTTTTTATGGGGTAAGCTTCATGGCTCATAAAGCCATCGCATCAAATGCCCATCAC CTCGCGCATGCTGTTGTACA
Product: malate dehydrogenase
Products: NA
Alternate protein names: NAD-ME
Number of amino acids: Translated: 562; Mature: 562
Protein sequence:
>562_residues MDDNKRPLYLPFAGPAILEAPLINKGSAFTEEERIFFNLEGLLPYAIETIEEQASRAYDQFRSFNNDLDKHIYLRNIQDT NETLFYRLVQNNIAEMMPIIYTPTVGLACERFSKNYRRNRGLFISYPNKDRIDDILNNSTRHKVKIIVVTDGERILGLGD QGIGGMGIPIGKLSLYTSCGGISPAYTLPITLDVGTDNPHLLEDPMYMGWRHPRIGGEEYSEFIEAFMEAVHRRWPDVLI QFEDFAQKNAMPILERYKDRYCCFNDDIQGTAAVTVGSLLAACQAAGTKLSDQRITFLGAGSAGCGIAEAIVAQMVSEGI SDDQARSQVFMVDRWGLLLDNMPNLLPFQQKLAQKIDNINHWDDFSDNVSLLNVVNNAKPTVLIGVSGAPGLFTEEIIRA MHSHCARPIVFPLSNPTSRVEATPKDILHWTSGQALVATGSPFEPVVVDDVTYDIAQCNNSYIFPGIGLGVLACGANRVS NEMLMASSRALAECSPLAKDGSGPLLPPLEEIHDVSKHIAFAVAKVAIEQGHALDTTDELLMQSIEANFWYPEYRRYKRT SF
Sequences:
>Translated_562_residues MDDNKRPLYLPFAGPAILEAPLINKGSAFTEEERIFFNLEGLLPYAIETIEEQASRAYDQFRSFNNDLDKHIYLRNIQDT NETLFYRLVQNNIAEMMPIIYTPTVGLACERFSKNYRRNRGLFISYPNKDRIDDILNNSTRHKVKIIVVTDGERILGLGD QGIGGMGIPIGKLSLYTSCGGISPAYTLPITLDVGTDNPHLLEDPMYMGWRHPRIGGEEYSEFIEAFMEAVHRRWPDVLI QFEDFAQKNAMPILERYKDRYCCFNDDIQGTAAVTVGSLLAACQAAGTKLSDQRITFLGAGSAGCGIAEAIVAQMVSEGI SDDQARSQVFMVDRWGLLLDNMPNLLPFQQKLAQKIDNINHWDDFSDNVSLLNVVNNAKPTVLIGVSGAPGLFTEEIIRA MHSHCARPIVFPLSNPTSRVEATPKDILHWTSGQALVATGSPFEPVVVDDVTYDIAQCNNSYIFPGIGLGVLACGANRVS NEMLMASSRALAECSPLAKDGSGPLLPPLEEIHDVSKHIAFAVAKVAIEQGHALDTTDELLMQSIEANFWYPEYRRYKRT SF >Mature_562_residues MDDNKRPLYLPFAGPAILEAPLINKGSAFTEEERIFFNLEGLLPYAIETIEEQASRAYDQFRSFNNDLDKHIYLRNIQDT NETLFYRLVQNNIAEMMPIIYTPTVGLACERFSKNYRRNRGLFISYPNKDRIDDILNNSTRHKVKIIVVTDGERILGLGD QGIGGMGIPIGKLSLYTSCGGISPAYTLPITLDVGTDNPHLLEDPMYMGWRHPRIGGEEYSEFIEAFMEAVHRRWPDVLI QFEDFAQKNAMPILERYKDRYCCFNDDIQGTAAVTVGSLLAACQAAGTKLSDQRITFLGAGSAGCGIAEAIVAQMVSEGI SDDQARSQVFMVDRWGLLLDNMPNLLPFQQKLAQKIDNINHWDDFSDNVSLLNVVNNAKPTVLIGVSGAPGLFTEEIIRA MHSHCARPIVFPLSNPTSRVEATPKDILHWTSGQALVATGSPFEPVVVDDVTYDIAQCNNSYIFPGIGLGVLACGANRVS NEMLMASSRALAECSPLAKDGSGPLLPPLEEIHDVSKHIAFAVAKVAIEQGHALDTTDELLMQSIEANFWYPEYRRYKRT SF
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malic enzymes family
Homologues:
Organism=Homo sapiens, GI4505143, Length=522, Percent_Identity=43.8697318007663, Blast_Score=449, Evalue=1e-126, Organism=Homo sapiens, GI62420882, Length=530, Percent_Identity=42.8301886792453, Blast_Score=434, Evalue=1e-121, Organism=Homo sapiens, GI62420880, Length=530, Percent_Identity=42.8301886792453, Blast_Score=434, Evalue=1e-121, Organism=Homo sapiens, GI239049447, Length=530, Percent_Identity=42.8301886792453, Blast_Score=434, Evalue=1e-121, Organism=Homo sapiens, GI4505145, Length=557, Percent_Identity=42.3698384201077, Blast_Score=428, Evalue=1e-120, Organism=Homo sapiens, GI270265879, Length=468, Percent_Identity=45.7264957264957, Blast_Score=397, Evalue=1e-110, Organism=Escherichia coli, GI87081919, Length=559, Percent_Identity=67.6207513416816, Blast_Score=782, Evalue=0.0, Organism=Caenorhabditis elegans, GI17537199, Length=546, Percent_Identity=42.6739926739927, Blast_Score=411, Evalue=1e-115, Organism=Saccharomyces cerevisiae, GI6322823, Length=565, Percent_Identity=42.6548672566372, Blast_Score=439, Evalue=1e-124, Organism=Drosophila melanogaster, GI281362674, Length=519, Percent_Identity=45.0867052023121, Blast_Score=446, Evalue=1e-125, Organism=Drosophila melanogaster, GI21356279, Length=519, Percent_Identity=45.0867052023121, Blast_Score=445, Evalue=1e-125, Organism=Drosophila melanogaster, GI281362672, Length=519, Percent_Identity=45.0867052023121, Blast_Score=445, Evalue=1e-125, Organism=Drosophila melanogaster, GI24646388, Length=512, Percent_Identity=43.1640625, Blast_Score=425, Evalue=1e-119, Organism=Drosophila melanogaster, GI24646386, Length=512, Percent_Identity=43.1640625, Blast_Score=425, Evalue=1e-119, Organism=Drosophila melanogaster, GI78707232, Length=509, Percent_Identity=38.1139489194499, Blast_Score=380, Evalue=1e-105, Organism=Drosophila melanogaster, GI281363505, Length=508, Percent_Identity=37.992125984252, Blast_Score=377, Evalue=1e-104, Organism=Drosophila melanogaster, GI78707236, Length=508, Percent_Identity=37.992125984252, Blast_Score=377, Evalue=1e-104, Organism=Drosophila melanogaster, GI78707242, Length=537, Percent_Identity=39.1061452513966, Blast_Score=374, Evalue=1e-103, Organism=Drosophila melanogaster, GI78707238, Length=537, Percent_Identity=39.1061452513966, Blast_Score=374, Evalue=1e-103, Organism=Drosophila melanogaster, GI78707240, Length=516, Percent_Identity=39.7286821705426, Blast_Score=373, Evalue=1e-103, Organism=Drosophila melanogaster, GI281363503, Length=509, Percent_Identity=37.721021611002, Blast_Score=373, Evalue=1e-103, Organism=Drosophila melanogaster, GI19922384, Length=538, Percent_Identity=30.2973977695167, Blast_Score=254, Evalue=1e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MAO1_SHEAM (A1S8W7)
Other databases:
- EMBL: CP000507 - RefSeq: YP_928493.1 - ProteinModelPortal: A1S8W7 - SMR: A1S8W7 - STRING: A1S8W7 - GeneID: 4604868 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_2621 - NMPDR: fig|326297.7.peg.2458 - eggNOG: COG0281 - HOGENOM: HBG289821 - OMA: NARNIMK - PhylomeDB: A1S8W7 - ProtClustDB: PRK13529 - HAMAP: MF_01619 - InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR001891 - InterPro: IPR016040 - Gene3D: G3DSA:3.40.50.720 - PIRSF: PIRSF000106 - PRINTS: PR00072 - SMART: SM00919
Pfam domain/function: PF00390 malic; PF03949 Malic_M
EC number: =1.1.1.38
Molecular weight: Translated: 62484; Mature: 62484
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS00331 MALIC_ENZYMES
Important sites: ACT_SITE 101-101 ACT_SITE 172-172 BINDING 154-154 BINDING 267-267 BINDING 415-415
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDNKRPLYLPFAGPAILEAPLINKGSAFTEEERIFFNLEGLLPYAIETIEEQASRAYDQ CCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH FRSFNNDLDKHIYLRNIQDTNETLFYRLVQNNIAEMMPIIYTPTVGLACERFSKNYRRNR HHHHCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHCC GLFISYPNKDRIDDILNNSTRHKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCG CEEEECCCCHHHHHHHCCCCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEEEECCC GISPAYTLPITLDVGTDNPHLLEDPMYMGWRHPRIGGEEYSEFIEAFMEAVHRRWPDVLI CCCCCEEEEEEEEECCCCCCEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHEE QFEDFAQKNAMPILERYKDRYCCFNDDIQGTAAVTVGSLLAACQAAGTKLSDQRITFLGA EHHHHHCCCCCHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC GSAGCGIAEAIVAQMVSEGISDDQARSQVFMVDRWGLLLDNMPNLLPFQQKLAQKIDNIN CCCCCHHHHHHHHHHHHCCCCCCCHHCEEEEEEHHHHHHHCCCCCCHHHHHHHHHHCCCC HWDDFSDNVSLLNVVNNAKPTVLIGVSGAPGLFTEEIIRAMHSHCARPIVFPLSNPTSRV CCCCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHC EATPKDILHWTSGQALVATGSPFEPVVVDDVTYDIAQCNNSYIFPGIGLGVLACGANRVS CCCHHHHHEECCCCEEEECCCCCCCEEECCCHHHHHHCCCCEECCCCCHHHHHCCCHHHH NEMLMASSRALAECSPLAKDGSGPLLPPLEEIHDVSKHIAFAVAKVAIEQGHALDTTDEL HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LMQSIEANFWYPEYRRYKRTSF HHHHHHCCCCCHHHHHHHCCCC >Mature Secondary Structure MDDNKRPLYLPFAGPAILEAPLINKGSAFTEEERIFFNLEGLLPYAIETIEEQASRAYDQ CCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH FRSFNNDLDKHIYLRNIQDTNETLFYRLVQNNIAEMMPIIYTPTVGLACERFSKNYRRNR HHHHCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHCC GLFISYPNKDRIDDILNNSTRHKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCG CEEEECCCCHHHHHHHCCCCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEEEECCC GISPAYTLPITLDVGTDNPHLLEDPMYMGWRHPRIGGEEYSEFIEAFMEAVHRRWPDVLI CCCCCEEEEEEEEECCCCCCEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHEE QFEDFAQKNAMPILERYKDRYCCFNDDIQGTAAVTVGSLLAACQAAGTKLSDQRITFLGA EHHHHHCCCCCHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC GSAGCGIAEAIVAQMVSEGISDDQARSQVFMVDRWGLLLDNMPNLLPFQQKLAQKIDNIN CCCCCHHHHHHHHHHHHCCCCCCCHHCEEEEEEHHHHHHHCCCCCCHHHHHHHHHHCCCC HWDDFSDNVSLLNVVNNAKPTVLIGVSGAPGLFTEEIIRAMHSHCARPIVFPLSNPTSRV CCCCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHC EATPKDILHWTSGQALVATGSPFEPVVVDDVTYDIAQCNNSYIFPGIGLGVLACGANRVS CCCHHHHHEECCCCEEEECCCCCCCEEECCCHHHHHHCCCCEECCCCCHHHHHCCCHHHH NEMLMASSRALAECSPLAKDGSGPLLPPLEEIHDVSKHIAFAVAKVAIEQGHALDTTDEL HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LMQSIEANFWYPEYRRYKRTSF HHHHHHCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA