Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is yehS [H]

Identifier: 119775752

GI number: 119775752

Start: 3137841

End: 3138308

Strand: Direct

Name: yehS [H]

Synonym: Sama_2620

Alternate gene names: 119775752

Gene position: 3137841-3138308 (Clockwise)

Preceding gene: 119775751

Following gene: 119775753

Centisome position: 72.87

GC content: 54.7

Gene sequence:

>468_bases
ATGCCCATGACAAACAACGATATTCTGCGCCGCCTGCGCTTTGCCCTGAATCTGAGTGACAGCAAGGTTGTCGCTCTCTT
CGCCCTGGTCCATCAACCGATAACCGAAGATGCCCTGCTCGCCATGCTGAAAAAGGAAGATGAACCCGGTTTTCGTCCCT
GCACCGACAAGGAACTCTGCCAGTTCCTGGATGGTTTGGTTATTGAGCGCCGCGGACTGAGACCAGGTGACGGTGTGCCT
GCGCCGATGCCACTGGATAATAATCTGGTATTCAAAAAGATCCGCATTGCACTGGAGCTGAAGGAAGATGACATCCTGGC
CATGCTAACCAAGGCCGGATTCGCTCTCTCCAAGTCGGAACTGGGCGCCATTTTCAGAAACCCGGACCACCGCCATTATC
GTCCCTGTGGCAATCAGTTGTTGCGCAACTTTTTGAAGGGCCTGTCCATCAGCCTCCGCGGTCGCTGA

Upstream 100 bases:

>100_bases
CGTTATGCCAGCTTCTCACTGCATGCAAACGCAGACAGCATTAGCCCACAGCAGACCCCTTAGGTATAATTGCCCCAGCC
CGGCAATAGCCTTTCAATGG

Downstream 100 bases:

>100_bases
TCTGTCAGATAGCATGCTGTGATGCCCAAAAAACGCAGCGTCAGAGGCCAAAAAGCCATCGTCAATCGATGGCTTTTTTG
TTTGAGTTAAACAGCGGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MPMTNNDILRRLRFALNLSDSKVVALFALVHQPITEDALLAMLKKEDEPGFRPCTDKELCQFLDGLVIERRGLRPGDGVP
APMPLDNNLVFKKIRIALELKEDDILAMLTKAGFALSKSELGAIFRNPDHRHYRPCGNQLLRNFLKGLSISLRGR

Sequences:

>Translated_155_residues
MPMTNNDILRRLRFALNLSDSKVVALFALVHQPITEDALLAMLKKEDEPGFRPCTDKELCQFLDGLVIERRGLRPGDGVP
APMPLDNNLVFKKIRIALELKEDDILAMLTKAGFALSKSELGAIFRNPDHRHYRPCGNQLLRNFLKGLSISLRGR
>Mature_154_residues
PMTNNDILRRLRFALNLSDSKVVALFALVHQPITEDALLAMLKKEDEPGFRPCTDKELCQFLDGLVIERRGLRPGDGVPA
PMPLDNNLVFKKIRIALELKEDDILAMLTKAGFALSKSELGAIFRNPDHRHYRPCGNQLLRNFLKGLSISLRGR

Specific function: Unknown

COG id: COG4807

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788443, Length=150, Percent_Identity=44.6666666666667, Blast_Score=130, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009921 [H]

Pfam domain/function: PF07308 DUF1456 [H]

EC number: NA

Molecular weight: Translated: 17493; Mature: 17362

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMTNNDILRRLRFALNLSDSKVVALFALVHQPITEDALLAMLKKEDEPGFRPCTDKELC
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHH
QFLDGLVIERRGLRPGDGVPAPMPLDNNLVFKKIRIALELKEDDILAMLTKAGFALSKSE
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEHEEHEEECCCHHHHHHHHHCCCCCHHH
LGAIFRNPDHRHYRPCGNQLLRNFLKGLSISLRGR
HHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure 
PMTNNDILRRLRFALNLSDSKVVALFALVHQPITEDALLAMLKKEDEPGFRPCTDKELC
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHH
QFLDGLVIERRGLRPGDGVPAPMPLDNNLVFKKIRIALELKEDDILAMLTKAGFALSKSE
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEHEEHEEECCCHHHHHHHHHCCCCCHHH
LGAIFRNPDHRHYRPCGNQLLRNFLKGLSISLRGR
HHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]