| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775751
Identifier: 119775751
GI number: 119775751
Start: 3136754
End: 3137803
Strand: Direct
Name: 119775751
Synonym: Sama_2619
Alternate gene names: NA
Gene position: 3136754-3137803 (Clockwise)
Preceding gene: 119775749
Following gene: 119775752
Centisome position: 72.84
GC content: 50.95
Gene sequence:
>1050_bases ATGAATACTAACAAGGGATTGTTTAAATTAATTTTTTCACTTTCATGTCTGTTGTTTTTTTCTGCCGCACAAGCAACGAA ACTGACGGAGCTCAAGAGCGCACTGAATGCACAGATTTCACCCAATTTTCAAGGCGTCATCTGGGTTCAACATCAGGATA AACAGTTGTTTGTTAAAACGGCGGGCGAAGGCATCACGAAAGATAGCCTGTTCATATTGGGCTCTATTTCCAAGCCTGTG TTCAGCAGCTTTTATCTGAGCCGGCATCATGCGGCCCTGTTTTCACCGCTGGCCACATCGCTAAAGCCCAACTTCTACCC CGCGGAACAAAGCCTTACCCCGGCTATGTTGCTCAGCCACACCTCGGGCATCAACAGACCGTTTACCGGCATGACATCAA ATGGACCCGGACAATTCGAATACAGCAACGGCAACTATCAATTTTTGGCAAATAACCTTAATCCCGGCGACAGTGCAGCT TGGATGTCTGACTTGAATCAGTTCCTTCAAAGCAACGGATTGGATATTCAAGCCGCTGCGGGCGAGACCAAGACTCTCCG GCAAACTTATCCTCGCCTGGTTCAGGGCTTTGATGAGCAAGCCAACCAACGTGAAGCCGTTGAATCAACTATAACGACCG CCAGCGCCGCGTCTGGTACCCTGATAGGCTCAGCCAGGGGCGTTGCCGATTTTCAGCAAAAGCTTCACACTGGCCAATTG CTGGCGGATAGCGCCTATCAGAACATGATTACTCCCGTGGCTTTACGACAACATCGCTGGGGAACGCTTGAATATGGTCT TGGGCTCCAAATCGCACAGTCGCCGCAGGAGTACAGCCATAGCGGCTACATTCCTGGCTTTATGAGTTTGATGCTCTACT ACCCCGAAACGCAGTTGCAGCTGGTGTTGCTGCAGAATGTCTCAGGTGACCTCAGCAATCCCGAGGCGGTCTTTGCCTTC CAGGATGAGCTTCGCGCCCTGATGCGCCGTTATGCCAGCTTCTCACTGCATGCAAACGCAGACAGCATTAGCCCACAGCA GACCCCTTAG
Upstream 100 bases:
>100_bases CCAATTTGTTAATTATGTCAACCACACAGAAACACATTAATAACAACTTATTGCGCTGCCAGCACCTTTCTGGACGCAAC AATTGAGGAATTAATTCGCA
Downstream 100 bases:
>100_bases GTATAATTGCCCCAGCCCGGCAATAGCCTTTCAATGGATGCCCATGACAAACAACGATATTCTGCGCCGCCTGCGCTTTG CCCTGAATCTGAGTGACAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MNTNKGLFKLIFSLSCLLFFSAAQATKLTELKSALNAQISPNFQGVIWVQHQDKQLFVKTAGEGITKDSLFILGSISKPV FSSFYLSRHHAALFSPLATSLKPNFYPAEQSLTPAMLLSHTSGINRPFTGMTSNGPGQFEYSNGNYQFLANNLNPGDSAA WMSDLNQFLQSNGLDIQAAAGETKTLRQTYPRLVQGFDEQANQREAVESTITTASAASGTLIGSARGVADFQQKLHTGQL LADSAYQNMITPVALRQHRWGTLEYGLGLQIAQSPQEYSHSGYIPGFMSLMLYYPETQLQLVLLQNVSGDLSNPEAVFAF QDELRALMRRYASFSLHANADSISPQQTP
Sequences:
>Translated_349_residues MNTNKGLFKLIFSLSCLLFFSAAQATKLTELKSALNAQISPNFQGVIWVQHQDKQLFVKTAGEGITKDSLFILGSISKPV FSSFYLSRHHAALFSPLATSLKPNFYPAEQSLTPAMLLSHTSGINRPFTGMTSNGPGQFEYSNGNYQFLANNLNPGDSAA WMSDLNQFLQSNGLDIQAAAGETKTLRQTYPRLVQGFDEQANQREAVESTITTASAASGTLIGSARGVADFQQKLHTGQL LADSAYQNMITPVALRQHRWGTLEYGLGLQIAQSPQEYSHSGYIPGFMSLMLYYPETQLQLVLLQNVSGDLSNPEAVFAF QDELRALMRRYASFSLHANADSISPQQTP >Mature_349_residues MNTNKGLFKLIFSLSCLLFFSAAQATKLTELKSALNAQISPNFQGVIWVQHQDKQLFVKTAGEGITKDSLFILGSISKPV FSSFYLSRHHAALFSPLATSLKPNFYPAEQSLTPAMLLSHTSGINRPFTGMTSNGPGQFEYSNGNYQFLANNLNPGDSAA WMSDLNQFLQSNGLDIQAAAGETKTLRQTYPRLVQGFDEQANQREAVESTITTASAASGTLIGSARGVADFQQKLHTGQL LADSAYQNMITPVALRQHRWGTLEYGLGLQIAQSPQEYSHSGYIPGFMSLMLYYPETQLQLVLLQNVSGDLSNPEAVFAF QDELRALMRRYASFSLHANADSISPQQTP
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38297; Mature: 38297
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTNKGLFKLIFSLSCLLFFSAAQATKLTELKSALNAQISPNFQGVIWVQHQDKQLFVKT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEE AGEGITKDSLFILGSISKPVFSSFYLSRHHAALFSPLATSLKPNFYPAEQSLTPAMLLSH CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH TSGINRPFTGMTSNGPGQFEYSNGNYQFLANNLNPGDSAAWMSDLNQFLQSNGLDIQAAA CCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECC GETKTLRQTYPRLVQGFDEQANQREAVESTITTASAASGTLIGSARGVADFQQKLHTGQL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHH LADSAYQNMITPVALRQHRWGTLEYGLGLQIAQSPQEYSHSGYIPGFMSLMLYYPETQLQ HHHHHHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHHCCCCCCHHHHHHHHHCCCCCEE LVLLQNVSGDLSNPEAVFAFQDELRALMRRYASFSLHANADSISPQQTP EEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHCEEEECCCCCCCCCCCC >Mature Secondary Structure MNTNKGLFKLIFSLSCLLFFSAAQATKLTELKSALNAQISPNFQGVIWVQHQDKQLFVKT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEE AGEGITKDSLFILGSISKPVFSSFYLSRHHAALFSPLATSLKPNFYPAEQSLTPAMLLSH CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH TSGINRPFTGMTSNGPGQFEYSNGNYQFLANNLNPGDSAAWMSDLNQFLQSNGLDIQAAA CCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECC GETKTLRQTYPRLVQGFDEQANQREAVESTITTASAASGTLIGSARGVADFQQKLHTGQL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHH LADSAYQNMITPVALRQHRWGTLEYGLGLQIAQSPQEYSHSGYIPGFMSLMLYYPETQLQ HHHHHHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHHCCCCCCHHHHHHHHHCCCCCEE LVLLQNVSGDLSNPEAVFAFQDELRALMRRYASFSLHANADSISPQQTP EEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHCEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA