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The map label for this gene is rlpA [C]

Identifier: 119775723

GI number: 119775723

Start: 3099319

End: 3100155

Strand: Direct

Name: rlpA [C]

Synonym: Sama_2591

Alternate gene names: 119775723

Gene position: 3099319-3100155 (Clockwise)

Preceding gene: 119775722

Following gene: 119775724

Centisome position: 71.97

GC content: 53.17

Gene sequence:

>837_bases
ATGCGCATGCCAAGTATTAAATCCTGTTGGCCGTTATTGGCTCTGACACTCATTCTGGGTGGTTGCTCTTCCTCGCCGGA
GCCCGGGAGCAGCACTAAAACCAGTACCAAGGGGGACAGGTATCATCAAAAACACGATGCCTACCCAGACTCGGCGCCTG
ATGTCAGCCAGGTTCCCGATGCAATCCCCCGTTACGAGCCCTACAGCAGGGGCGGCAACAAACCTTATACTGTGATGGGC
AAGTCCTATAACGTGTTGGCGTCCGCCGCCAACTTCCGTGAGTCCGGTCTCGCCTCCTGGTATGGCACCAAATTCCATGG
ATACCACACCTCCAATGGCGAGGTGTATGACATGTACAGCATGACAGCGGCCCACAAGACCCTGCCCCTGCCAAGTTTTG
TTCGCGTACGAAATCTGGATAACAAAAAAGAAGTGATAGTCAGGGTGAATGACAGGGGGCCGTTTCACGAGGGGCGCATC
ATAGACTTGTCATACGCCGCCGCCTACCGCCTCGGCATGTTGAACACGGGTACCGCCCGGGTCGAGATTGAAACCATTTA
CATTCCTTCGCCGGAGAATGAGGCTTATACCAGCAGTCAGGATCCCAATCATTACTTTATTCAGGTTGTGGCATCCAAAG
ACAGAGAAAGGTTGAACCGGTTGGGTAAAGAACTTGCCGCCAAATACCAGCTCGGATATCGCTTACAGGAAAAAGATACC
CTCTATCGCCTGCAATTGGGCCCCCTTGGCCACGAAGGTATTGCCAGTAAAATGCTGCAGCAGATGCGCCAACAGGGTTA
CCCAAGTGGCTATCTGGTTACTGAGCCCAAATCCTGA

Upstream 100 bases:

>100_bases
GAATACTGGATGGGTTTTAAGAATTTTTTCGTAATCACCCGTTATAATCGCAGCCCTCTTTACGCCATGGCGGCCTATGA
ATTCAGTGAGCAGCTTAAAC

Downstream 100 bases:

>100_bases
ACATGAAGGAACCTTCACTGCAATCCCTTGTCAATTAATGTTAGACTCGACGGGTTTCATACCGTTTACTAAAACCTCCT
GAGAAAACGTGTAGTTAATG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MRMPSIKSCWPLLALTLILGGCSSSPEPGSSTKTSTKGDRYHQKHDAYPDSAPDVSQVPDAIPRYEPYSRGGNKPYTVMG
KSYNVLASAANFRESGLASWYGTKFHGYHTSNGEVYDMYSMTAAHKTLPLPSFVRVRNLDNKKEVIVRVNDRGPFHEGRI
IDLSYAAAYRLGMLNTGTARVEIETIYIPSPENEAYTSSQDPNHYFIQVVASKDRERLNRLGKELAAKYQLGYRLQEKDT
LYRLQLGPLGHEGIASKMLQQMRQQGYPSGYLVTEPKS

Sequences:

>Translated_278_residues
MRMPSIKSCWPLLALTLILGGCSSSPEPGSSTKTSTKGDRYHQKHDAYPDSAPDVSQVPDAIPRYEPYSRGGNKPYTVMG
KSYNVLASAANFRESGLASWYGTKFHGYHTSNGEVYDMYSMTAAHKTLPLPSFVRVRNLDNKKEVIVRVNDRGPFHEGRI
IDLSYAAAYRLGMLNTGTARVEIETIYIPSPENEAYTSSQDPNHYFIQVVASKDRERLNRLGKELAAKYQLGYRLQEKDT
LYRLQLGPLGHEGIASKMLQQMRQQGYPSGYLVTEPKS
>Mature_278_residues
MRMPSIKSCWPLLALTLILGGCSSSPEPGSSTKTSTKGDRYHQKHDAYPDSAPDVSQVPDAIPRYEPYSRGGNKPYTVMG
KSYNVLASAANFRESGLASWYGTKFHGYHTSNGEVYDMYSMTAAHKTLPLPSFVRVRNLDNKKEVIVRVNDRGPFHEGRI
IDLSYAAAYRLGMLNTGTARVEIETIYIPSPENEAYTSSQDPNHYFIQVVASKDRERLNRLGKELAAKYQLGYRLQEKDT
LYRLQLGPLGHEGIASKMLQQMRQQGYPSGYLVTEPKS

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=128, Percent_Identity=39.84375, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 31168; Mature: 31168

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMPSIKSCWPLLALTLILGGCSSSPEPGSSTKTSTKGDRYHQKHDAYPDSAPDVSQVPD
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHCCH
AIPRYEPYSRGGNKPYTVMGKSYNVLASAANFRESGLASWYGTKFHGYHTSNGEVYDMYS
HCCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHCCHHHCCCEECCEECCCCCEEEEHH
MTAAHKTLPLPSFVRVRNLDNKKEVIVRVNDRGPFHEGRIIDLSYAAAYRLGMLNTGTAR
HHHHHHCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEEHHHHHHHCCCCCCCEE
VEIETIYIPSPENEAYTSSQDPNHYFIQVVASKDRERLNRLGKELAAKYQLGYRLQEKDT
EEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCEEECCCCC
LYRLQLGPLGHEGIASKMLQQMRQQGYPSGYLVTEPKS
EEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCC
>Mature Secondary Structure
MRMPSIKSCWPLLALTLILGGCSSSPEPGSSTKTSTKGDRYHQKHDAYPDSAPDVSQVPD
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHCCH
AIPRYEPYSRGGNKPYTVMGKSYNVLASAANFRESGLASWYGTKFHGYHTSNGEVYDMYS
HCCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHCCHHHCCCEECCEECCCCCEEEEHH
MTAAHKTLPLPSFVRVRNLDNKKEVIVRVNDRGPFHEGRIIDLSYAAAYRLGMLNTGTAR
HHHHHHCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEEHHHHHHHCCCCCCCEE
VEIETIYIPSPENEAYTSSQDPNHYFIQVVASKDRERLNRLGKELAAKYQLGYRLQEKDT
EEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCEEECCCCC
LYRLQLGPLGHEGIASKMLQQMRQQGYPSGYLVTEPKS
EEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]