| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775664
Identifier: 119775664
GI number: 119775664
Start: 3041783
End: 3042007
Strand: Reverse
Name: 119775664
Synonym: Sama_2532
Alternate gene names: NA
Gene position: 3042007-3041783 (Counterclockwise)
Preceding gene: 119775665
Following gene: 119775663
Centisome position: 70.64
GC content: 47.56
Gene sequence:
>225_bases ATGAGTACCTTTATCGCAGCTTTTGCGGTGCTTATGGTGTTTTTTCTATTGATGTCAATTGGTTATATCATCAAGAAAAA GGCCGTAGCCGGTAGTTGCGGAGGCCTCGGTGCCTTGGGTATCGATAAAGCCTGTGATTGTGATGATCCCTGCGACAAGC GCAAAGCCAAAATGGCTGCCGAAGAGGCCCGCAAGGAAAAGCTAACCAAGGACAGGATCCTTTAA
Upstream 100 bases:
>100_bases GGGACTGGCGATAATGCTGATTGAAAAACAGGGCGAAGAGTTTGTGGTACACTACAGCGACGCATTTTTGCCCTTCGTTA AGTCCACTCAGGAGTGATGT
Downstream 100 bases:
>100_bases CGCAGGACAGGATCAAATAAAGGCTCCCCAGGGAGCCTTTATTGTTTTGTCACTTCTGTTTTATTTCCCCGAATAAACAC CTATGCTGGCTATACTGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 74; Mature: 73
Protein sequence:
>74_residues MSTFIAAFAVLMVFFLLMSIGYIIKKKAVAGSCGGLGALGIDKACDCDDPCDKRKAKMAAEEARKEKLTKDRIL
Sequences:
>Translated_74_residues MSTFIAAFAVLMVFFLLMSIGYIIKKKAVAGSCGGLGALGIDKACDCDDPCDKRKAKMAAEEARKEKLTKDRIL >Mature_73_residues STFIAAFAVLMVFFLLMSIGYIIKKKAVAGSCGGLGALGIDKACDCDDPCDKRKAKMAAEEARKEKLTKDRIL
Specific function: Unknown
COG id: COG2991
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007495 [H]
Pfam domain/function: PF04400 DUF539 [H]
EC number: NA
Molecular weight: Translated: 7989; Mature: 7857
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.4 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 10.8 %Cys+Met (Translated Protein) 5.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 9.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTFIAAFAVLMVFFLLMSIGYIIKKKAVAGSCGGLGALGIDKACDCDDPCDKRKAKMAA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH EEARKEKLTKDRIL HHHHHHHHHHHCCC >Mature Secondary Structure STFIAAFAVLMVFFLLMSIGYIIKKKAVAGSCGGLGALGIDKACDCDDPCDKRKAKMAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH EEARKEKLTKDRIL HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]