| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775644
Identifier: 119775644
GI number: 119775644
Start: 3018164
End: 3019075
Strand: Direct
Name: 119775644
Synonym: Sama_2512
Alternate gene names: NA
Gene position: 3018164-3019075 (Clockwise)
Preceding gene: 119775641
Following gene: 119775646
Centisome position: 70.09
GC content: 53.51
Gene sequence:
>912_bases TTGAAAACCTCAAATTTGGCCTATCTCTACGGGATGGCCGCGGTGCTTTTGTGGTCTACCGTTGCAACCGCCTTTAAGCT GGCGCTGGCGGAGTATTCGCCTTTGCAATTGCTGTTCATCGCGGTGATTACTTCAATTCTGGCCCTGAGTGTCATTCTCG GGTTTCAGGGTAAACTGAGGCAGGTCGCCCGTCAGTGGCAGGAAAGACCCCTGTTCTATCTGCAAACGGGGCTACTCAAC CCATTCCTCTATTATCTGGTGCTCTTTAAAGCATACGATCTTCTGCCAGCGCAGCAGGCGCTGTCACTGAACTATACCTG GGCGATTCTATTGCCGTTGCTGGCCGTGCCTCTGCTTGGTCAACAGCTGCGTAAAACCGATTTGCTGGCGGCCCTGATAG CCTACGGTGGCGTATTTGTGATTGCGACCGGCGGCAGTTTGGCCGGGTTTTCCCTGTCTGAACCAACTGGCATTGTCATG GCACTCACCAGCACCCTGCTTTGGTGCCTTTATTGGATAGTGAACACCAAAGATAAGGGCGACCCAGTGGTGAGCCTGAT GCTCAGCTTTTTGGTTGGCTTACCCTTTGTAACCGTGGCTATGCTGGTGACCCAAGGCCTGCCCACCTTTTCAGGCCAGG GCCTTGCCGCCGCTGTGTACGTGGGTTTATTTGAGATGGGTGTAACCTTCGTGCTCTGGCTGATGGCGCTCAAAAGCAGC GAGCGCACCGCCAATATCAGCACCCTGGTATTTCTCTCCCCCGTGCTGTCGATTGGCTTTATTGCATTGGTACTGGGTGA AGACATCAGGCTTTCCACCTTTATCGGTCTTGGTCTTATCCTCAGTGCATTGGCCCTGCAACAGTGGCTGCCGCGCTGGT TTGGTAATCAGACCGAAACCGTGAATTCATAA
Upstream 100 bases:
>100_bases TTTTTACATAATCAGGGCTGCAAACACGTATAATGCATGCAATCGAAGCGTTGACCCGTTCGGGTTGACCGGTTTGTCTC GAGTTACAGGAATCTGTTAG
Downstream 100 bases:
>100_bases AAAAAGGCCCTGAACAGGGCCTTTTTTCTGCCTTGGCTTTAAAAGCGGCTCAAAGCTGCTCGATACCCACTTCGCCAACG CCGACTTCAACCTTCAGCTT
Product: integral membrane domain-containing protein
Products: NA
Alternate protein names: Integral Membrane Domain-Containing Protein; Transporter Drug/Metabolite Exporter Family; DMT Family Permease; Drug/Metabolite Exporter Family Protein; DMT Superfamily Permease; Drug/Metabolite Transporter Superfamily Permease; Drug/Metabolite Transporter Permease; Permease DMT Superfamily; Permease Outative
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MKTSNLAYLYGMAAVLLWSTVATAFKLALAEYSPLQLLFIAVITSILALSVILGFQGKLRQVARQWQERPLFYLQTGLLN PFLYYLVLFKAYDLLPAQQALSLNYTWAILLPLLAVPLLGQQLRKTDLLAALIAYGGVFVIATGGSLAGFSLSEPTGIVM ALTSTLLWCLYWIVNTKDKGDPVVSLMLSFLVGLPFVTVAMLVTQGLPTFSGQGLAAAVYVGLFEMGVTFVLWLMALKSS ERTANISTLVFLSPVLSIGFIALVLGEDIRLSTFIGLGLILSALALQQWLPRWFGNQTETVNS
Sequences:
>Translated_303_residues MKTSNLAYLYGMAAVLLWSTVATAFKLALAEYSPLQLLFIAVITSILALSVILGFQGKLRQVARQWQERPLFYLQTGLLN PFLYYLVLFKAYDLLPAQQALSLNYTWAILLPLLAVPLLGQQLRKTDLLAALIAYGGVFVIATGGSLAGFSLSEPTGIVM ALTSTLLWCLYWIVNTKDKGDPVVSLMLSFLVGLPFVTVAMLVTQGLPTFSGQGLAAAVYVGLFEMGVTFVLWLMALKSS ERTANISTLVFLSPVLSIGFIALVLGEDIRLSTFIGLGLILSALALQQWLPRWFGNQTETVNS >Mature_303_residues MKTSNLAYLYGMAAVLLWSTVATAFKLALAEYSPLQLLFIAVITSILALSVILGFQGKLRQVARQWQERPLFYLQTGLLN PFLYYLVLFKAYDLLPAQQALSLNYTWAILLPLLAVPLLGQQLRKTDLLAALIAYGGVFVIATGGSLAGFSLSEPTGIVM ALTSTLLWCLYWIVNTKDKGDPVVSLMLSFLVGLPFVTVAMLVTQGLPTFSGQGLAAAVYVGLFEMGVTFVLWLMALKSS ERTANISTLVFLSPVLSIGFIALVLGEDIRLSTFIGLGLILSALALQQWLPRWFGNQTETVNS
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33012; Mature: 33012
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSNLAYLYGMAAVLLWSTVATAFKLALAEYSPLQLLFIAVITSILALSVILGFQGKLR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH QVARQWQERPLFYLQTGLLNPFLYYLVLFKAYDLLPAQQALSLNYTWAILLPLLAVPLLG HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHH QQLRKTDLLAALIAYGGVFVIATGGSLAGFSLSEPTGIVMALTSTLLWCLYWIVNTKDKG HHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC DPVVSLMLSFLVGLPFVTVAMLVTQGLPTFSGQGLAAAVYVGLFEMGVTFVLWLMALKSS CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC ERTANISTLVFLSPVLSIGFIALVLGEDIRLSTFIGLGLILSALALQQWLPRWFGNQTET CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC VNS CCC >Mature Secondary Structure MKTSNLAYLYGMAAVLLWSTVATAFKLALAEYSPLQLLFIAVITSILALSVILGFQGKLR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH QVARQWQERPLFYLQTGLLNPFLYYLVLFKAYDLLPAQQALSLNYTWAILLPLLAVPLLG HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHH QQLRKTDLLAALIAYGGVFVIATGGSLAGFSLSEPTGIVMALTSTLLWCLYWIVNTKDKG HHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC DPVVSLMLSFLVGLPFVTVAMLVTQGLPTFSGQGLAAAVYVGLFEMGVTFVLWLMALKSS CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC ERTANISTLVFLSPVLSIGFIALVLGEDIRLSTFIGLGLILSALALQQWLPRWFGNQTET CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC VNS CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA