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The map label for this gene is yggS [C]

Identifier: 119775610

GI number: 119775610

Start: 2980265

End: 2980972

Strand: Direct

Name: yggS [C]

Synonym: Sama_2477

Alternate gene names: 119775610

Gene position: 2980265-2980972 (Clockwise)

Preceding gene: 119775606

Following gene: 119775611

Centisome position: 69.21

GC content: 54.8

Gene sequence:

>708_bases
ATGACAACAATAGCAGACAGACTCTCGCTCGCCCAGCAGCGAATCGTCCAAGCGGCGCAAATTTCTTCAAGAAACCCATC
TGAAATCAAATTACTTGCGGTCAGCAAAACCAAGCCTGCCAGCGACATTCAGGCGGCCTACGATGCGGGTCAGCGTTTGT
TTGGTGAAAACTACGTTCAGGAGGGGGTGCAAAAAATCACTGACCTCACCTCCCCTTGCCCCAATATCGAGTGGCATTTT
ATCGGCCCTTTGCAGTCCAACAAGAGCCGTCCCGTTGCAGAGCATTTTGACTGGCTGCACACCCTCGACCGGGAAAAGCT
CGCCATCAGACTCAATGAGCAGCGCCCTGCCGAACTTGCGCCACTGAATGTGCTGATACAGGTCAATATCAGTGACGAAG
AGAGTAAATCCGGTGTAAAACCCGAGGATATTACAGCCCTGGCCGATGCCGTGTGCCGCCTGCCCAGGCTGCGTCTTCGG
GGACTGATGGCCATTCCCGCGCCAACCGATGACAAGGAAAGAGCCCAAACCGAGCTGGCCAACATGCAACGACTCTTTAA
AAGCCTGCAACAGAGCCACGGAACGCTCGGGCAAATAGATACGCTGTCCATGGGTATGAGCGGCGATTTGGAGCTTGCCA
TAGACAACGGCAGCACCCTGGTGCGGGTTGGCAGCGCTATTTTTGGCGAGCGGGATTACAGCCGCTAA

Upstream 100 bases:

>100_bases
GCAGACAGGTGTAGATCCGAGGCCTTGTGCTTTACACTAAACGCCAGTAACTCTGTGATTTCCATGGTATGGGATATCCA
TTCAACCGATTGATTACATG

Downstream 100 bases:

>100_bases
GGGCAATGCGCTGTGGCAATCATTGTATTTACGCGGCTTCGCCCCCATATTCTCGGTATCGCCAAGCCTTTAAATTCAAA
CAGGAATAAAGATGCAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MTTIADRLSLAQQRIVQAAQISSRNPSEIKLLAVSKTKPASDIQAAYDAGQRLFGENYVQEGVQKITDLTSPCPNIEWHF
IGPLQSNKSRPVAEHFDWLHTLDREKLAIRLNEQRPAELAPLNVLIQVNISDEESKSGVKPEDITALADAVCRLPRLRLR
GLMAIPAPTDDKERAQTELANMQRLFKSLQQSHGTLGQIDTLSMGMSGDLELAIDNGSTLVRVGSAIFGERDYSR

Sequences:

>Translated_235_residues
MTTIADRLSLAQQRIVQAAQISSRNPSEIKLLAVSKTKPASDIQAAYDAGQRLFGENYVQEGVQKITDLTSPCPNIEWHF
IGPLQSNKSRPVAEHFDWLHTLDREKLAIRLNEQRPAELAPLNVLIQVNISDEESKSGVKPEDITALADAVCRLPRLRLR
GLMAIPAPTDDKERAQTELANMQRLFKSLQQSHGTLGQIDTLSMGMSGDLELAIDNGSTLVRVGSAIFGERDYSR
>Mature_234_residues
TTIADRLSLAQQRIVQAAQISSRNPSEIKLLAVSKTKPASDIQAAYDAGQRLFGENYVQEGVQKITDLTSPCPNIEWHFI
GPLQSNKSRPVAEHFDWLHTLDREKLAIRLNEQRPAELAPLNVLIQVNISDEESKSGVKPEDITALADAVCRLPRLRLRG
LMAIPAPTDDKERAQTELANMQRLFKSLQQSHGTLGQIDTLSMGMSGDLELAIDNGSTLVRVGSAIFGERDYSR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=243, Percent_Identity=41.5637860082305, Blast_Score=144, Evalue=5e-35,
Organism=Escherichia coli, GI1789321, Length=237, Percent_Identity=60.7594936708861, Blast_Score=268, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI17533025, Length=227, Percent_Identity=40.0881057268723, Blast_Score=133, Evalue=6e-32,
Organism=Saccharomyces cerevisiae, GI6319435, Length=221, Percent_Identity=38.9140271493213, Blast_Score=124, Evalue=9e-30,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=42.1800947867299, Blast_Score=151, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25999; Mature: 25868

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIADRLSLAQQRIVQAAQISSRNPSEIKLLAVSKTKPASDIQAAYDAGQRLFGENYVQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EGVQKITDLTSPCPNIEWHFIGPLQSNKSRPVAEHFDWLHTLDREKLAIRLNEQRPAELA
HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC
PLNVLIQVNISDEESKSGVKPEDITALADAVCRLPRLRLRGLMAIPAPTDDKERAQTELA
CEEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHCHHHHHCCEEECCCCCCHHHHHHHHHH
NMQRLFKSLQQSHGTLGQIDTLSMGMSGDLELAIDNGSTLVRVGSAIFGERDYSR
HHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCCCEEEEHHHHHHCCCCCCC
>Mature Secondary Structure 
TTIADRLSLAQQRIVQAAQISSRNPSEIKLLAVSKTKPASDIQAAYDAGQRLFGENYVQ
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EGVQKITDLTSPCPNIEWHFIGPLQSNKSRPVAEHFDWLHTLDREKLAIRLNEQRPAELA
HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC
PLNVLIQVNISDEESKSGVKPEDITALADAVCRLPRLRLRGLMAIPAPTDDKERAQTELA
CEEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHCHHHHHCCEEECCCCCCHHHHHHHHHH
NMQRLFKSLQQSHGTLGQIDTLSMGMSGDLELAIDNGSTLVRVGSAIFGERDYSR
HHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCCCEEEEHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]