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The map label for this gene is yqgF [C]

Identifier: 119775606

GI number: 119775606

Start: 2976840

End: 2977259

Strand: Direct

Name: yqgF [C]

Synonym: Sama_2473

Alternate gene names: 119775606

Gene position: 2976840-2977259 (Clockwise)

Preceding gene: 119775605

Following gene: 119775610

Centisome position: 69.13

GC content: 51.43

Gene sequence:

>420_bases
ATGAGCACAGTGATGGGATTTGATTTTGGTACCAAGAGTATCGGTATTGCCGTTGGCCAGTCGATTACCGGCAGCGCCAA
CCCGCTCACCTCAATTAAGGCGGTGGATGGTATTCCCAACTGGGAAGATATAGGTAAGTTAATCAATGAGTGGAAACCGG
ACCTGCTGGTAATAGGTCTGCCGCTGAACATGGACGGCACAGAGCAGGAGATGACCCAGCGGGCCCGCAAGTTTGCCAAC
CGCTTGAATGGCCGTTTCGGAGTCAAGATTGCCACCCAGGATGAGAGGCTGACCACTGCCGATGCCAAGGCAAGATTATT
CGAACTTGGCGGTTTTAAGGCTCTCACCAAGGGCCAGGTGGATGCGGTATCGGCAGTATTGATTGTCGAAAGTTACTTTG
AAAATCAATATGGTGCCTGA

Upstream 100 bases:

>100_bases
AAATCCTGTTTGCCATTCCCCACGAAGACCGCTGGAATCAGGCCAGTAAAGCCCTTGGCTTTGAGCTTTGGCAAGTGTCC
AATCAGGCGGGGCACGCCTG

Downstream 100 bases:

>100_bases
TGTTGCCAAAATAAAAAACGCCGCTGAATGCGGCGTTTTTTATTTCGTCTCCCCTTGCCTGAAACACTCAGAGTGCTTTG
GGCAAGGCAGCCTCGATAGC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSTVMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGLPLNMDGTEQEMTQRARKFAN
RLNGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQVDAVSAVLIVESYFENQYGA

Sequences:

>Translated_139_residues
MSTVMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGLPLNMDGTEQEMTQRARKFAN
RLNGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQVDAVSAVLIVESYFENQYGA
>Mature_138_residues
STVMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGLPLNMDGTEQEMTQRARKFANR
LNGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQVDAVSAVLIVESYFENQYGA

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=62.962962962963, Blast_Score=191, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15054; Mature: 14923

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGL
CCCEECCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
PLNMDGTEQEMTQRARKFANRLNGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQV
CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHCCCCEECCCCCH
DAVSAVLIVESYFENQYGA
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STVMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGL
CCEECCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
PLNMDGTEQEMTQRARKFANRLNGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQV
CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHCCCCEECCCCCH
DAVSAVLIVESYFENQYGA
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]