| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775507
Identifier: 119775507
GI number: 119775507
Start: 2850876
End: 2851619
Strand: Direct
Name: 119775507
Synonym: Sama_2373
Alternate gene names: NA
Gene position: 2850876-2851619 (Clockwise)
Preceding gene: 119775504
Following gene: 119775508
Centisome position: 66.2
GC content: 51.34
Gene sequence:
>744_bases ATGATTATTCTGGTCGGCGGTGAAAAAGGTGGCAGCGGCAAGAGCTGTCTGGCACAAAACATAGCCGTGTTTCTTACCAA GGAATGCGGTGGGTCAGTGATCATGGTTGACTGTGATCCCCAGCGTACCACGTCAGATTGGATCCAGGCCCGCAACAATA ATCCCAAGCTTCCTGCAATCAATTGCGTGCAGCTGTATGGCAAAATTCGTAACGACTTGCTGAGCCTCGAACAGCACTAC GATTACGTCATCGTGGATTGTGGTGGTCAGGATAACCTGGCGCTGCGTGCCACCATGTCTGTTGCCTCCCACATCCTGAT GCCCCTTCGTCCCAAACGCCGCGATCTCAAGACCGTGAGCCACATGGACGACGTGGTTGCCACCTGTATGATGATAAACC CCAAGATGAAGGCATCGTTTGTGATAACCCAGTGCCCGACGCTGCCAAATCAGTCCAACCGGATCCTGGAAGCCAAGGAA GTATGCCGCACATACGACATCAATGTGCTCGACGCCATTACTTACTCACGCAATATCTATGACGACAGTGAAGAGTCGGG TCTGTCTGTGATAGAAATTGATCACGAAGGCAAAGCCGCCGATGAAATTCGCGCCATCGCCTGTGAAATGCTGGGCGCTG CCAATGCTCAGGAAGTGCGTAATCAGTTGCAGCAGACTCAAATCAGTAAAATGAGAGGTCAATATGGGACTGGCAGATCT CAAGAAAAACTCTACGCCGTCTAA
Upstream 100 bases:
>100_bases ATATACACCCCAGGCACTAGATTGAGCTTACCGTAGGTTGTGCGTTAGCAGGGACCTCACTGTAAATCACAGGCCCAAAA GCAAATACAGGGGTAAAAAG
Downstream 100 bases:
>100_bases TAACCGGCTGGCGTTGGCCGCTTCCATTGAAGACTTTATCGAAGGGGCCAACCTGTATGCCATGGGGCTGCCACAGCAGC GCGGTGCGGTGATATCACTG
Product: hypothetical protein
Products: NA
Alternate protein names: Cobyrinic Acid A C-Diamide Synthase; Partition Protein; Plasmid Partitioning Protein; ParA Family Protein; ParA-Like Protein; Plasmid Partition Protein ParA; Partitioning Protein; Plasmid Partition Protein ParA-Like Protein; ParA Protein; PARA Protein; Plasmid Stability Protein ParA; Plasmid Stability/Partitioning Protein; ATPases Involved In Chromosome Partitioning; CobQ/CobB/MinD/ParA Domain-Containing Protein; Plasmid Partitioning-Family Protein; ParA Partitioning Protein; Plasmid Segregation Oscillating ATPase ParF; Plasmid Partition Protein A; Chromosome Partitioning ATPase; ATPase ParA Type; Partitioning Protein ParA Family; Plasmid Stability Protein; ATPase Putative Partition Protein; Chromosome Partitioning ATPase ParA; Chromosome Partitioning; ATPase Involved In Chromosome Partitioning-Like Protein; ATPase; YafB Protein; Chromosome Partitioning Protein; MinD/ParA Family ATPase; Partition Protein A; ParA Partitioning-Like Protein; Chromosome Partitioning Protein ParA; Partition Protein ATPase Activity; Partitioning Protein ParA-Family; ParA Plasmid Partitioning Protein
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MIILVGGEKGGSGKSCLAQNIAVFLTKECGGSVIMVDCDPQRTTSDWIQARNNNPKLPAINCVQLYGKIRNDLLSLEQHY DYVIVDCGGQDNLALRATMSVASHILMPLRPKRRDLKTVSHMDDVVATCMMINPKMKASFVITQCPTLPNQSNRILEAKE VCRTYDINVLDAITYSRNIYDDSEESGLSVIEIDHEGKAADEIRAIACEMLGAANAQEVRNQLQQTQISKMRGQYGTGRS QEKLYAV
Sequences:
>Translated_247_residues MIILVGGEKGGSGKSCLAQNIAVFLTKECGGSVIMVDCDPQRTTSDWIQARNNNPKLPAINCVQLYGKIRNDLLSLEQHY DYVIVDCGGQDNLALRATMSVASHILMPLRPKRRDLKTVSHMDDVVATCMMINPKMKASFVITQCPTLPNQSNRILEAKE VCRTYDINVLDAITYSRNIYDDSEESGLSVIEIDHEGKAADEIRAIACEMLGAANAQEVRNQLQQTQISKMRGQYGTGRS QEKLYAV >Mature_247_residues MIILVGGEKGGSGKSCLAQNIAVFLTKECGGSVIMVDCDPQRTTSDWIQARNNNPKLPAINCVQLYGKIRNDLLSLEQHY DYVIVDCGGQDNLALRATMSVASHILMPLRPKRRDLKTVSHMDDVVATCMMINPKMKASFVITQCPTLPNQSNRILEAKE VCRTYDINVLDAITYSRNIYDDSEESGLSVIEIDHEGKAADEIRAIACEMLGAANAQEVRNQLQQTQISKMRGQYGTGRS QEKLYAV
Specific function: Unknown
COG id: COG1192
COG function: function code D; ATPases involved in chromosome partitioning
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27344; Mature: 27344
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 7.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIILVGGEKGGSGKSCLAQNIAVFLTKECGGSVIMVDCDPQRTTSDWIQARNNNPKLPAI CEEEEECCCCCCCHHHHHHHHHEEEEECCCCCEEEEECCCCCCCHHHHHCCCCCCCCCHH NCVQLYGKIRNDLLSLEQHYDYVIVDCGGQDNLALRATMSVASHILMPLRPKRRDLKTVS HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHH HMDDVVATCMMINPKMKASFVITQCPTLPNQSNRILEAKEVCRTYDINVLDAITYSRNIY HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCC DDSEESGLSVIEIDHEGKAADEIRAIACEMLGAANAQEVRNQLQQTQISKMRGQYGTGRS CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC QEKLYAV CCCEECC >Mature Secondary Structure MIILVGGEKGGSGKSCLAQNIAVFLTKECGGSVIMVDCDPQRTTSDWIQARNNNPKLPAI CEEEEECCCCCCCHHHHHHHHHEEEEECCCCCEEEEECCCCCCCHHHHHCCCCCCCCCHH NCVQLYGKIRNDLLSLEQHYDYVIVDCGGQDNLALRATMSVASHILMPLRPKRRDLKTVS HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHH HMDDVVATCMMINPKMKASFVITQCPTLPNQSNRILEAKEVCRTYDINVLDAITYSRNIY HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCC DDSEESGLSVIEIDHEGKAADEIRAIACEMLGAANAQEVRNQLQQTQISKMRGQYGTGRS CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC QEKLYAV CCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA