| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is flgL [H]
Identifier: 119775443
GI number: 119775443
Start: 2773090
End: 2774295
Strand: Reverse
Name: flgL [H]
Synonym: Sama_2308
Alternate gene names: 119775443
Gene position: 2774295-2773090 (Counterclockwise)
Preceding gene: 119775444
Following gene: 119775442
Centisome position: 64.43
GC content: 51.16
Gene sequence:
>1206_bases ATGCGTATTTCTACCTCGCAAATGTTTACCCAGAACACCAATAACATACTGCAAAAGCAGACAGAGACCGCGAAGCTGCT CGAACAGCTGTCCAGTGGCAAGAAGGTGAATACCTCGGGTGACGACCCTGTGGCGGCCTTGGGTATCGACAATCTCAACC AGCAGCAGGCGCTGGTGGATCAATTTCTGAAGAACATCGACTACGCCAAAAATCATTTAGGCATTGCCGAGAGTAAGCTT GGCAGCGCCGAGGAGTTGGTTACCGGTTTACGAGAACAAATTCTGCGCGGGGTAAATGGTGGCCTTTCGCCCTCCGAGCG GCAAATGATTGCCGATGAGATGCGTGGCAGCCTGCAGGAATTGCTGAATGTGGCAAACACCCGGGATGAGTCCGGCAACT TTATGTTCTCCGGTTTTAAAACAGACACAGAACCCTTTGCCTTCGACGGTGCCGGCAACATGGTTTATAGCGGTGATGCC GGCGTGCGTGACGCCATGATTTCCCGTGGCATCGCCATGGGCACCAATGTGCCCGGCGATATGGCGTTTATGACGTCGCC CAACGCACTTGGCGATTATACCGTCAATTATTTGTCGAGCCAGGCAGGTGATTTTAAGGTTCAAAGCGCTGCGATAACCA ACCCAGCAGCTCATGTGGAAGACACTTATACCTTTAATTTTATTGATAATGGTTCAGGCGGCGTAAACCTGGAAGTGCGT GACAGTGCCAATGGGCTGGTCACCACAGTGAACAACTTTGATGCCACCAATCCTGTTAGTTTCAACGGAATAGACGTCAA GCTGGAAGGCACACCAGCCGCTGGCGACAGTATTTCCCTGGCTCCTCAGGCTGAAGTCAGCATTTTCGACACCATTAATA AGGCTATCGCCCTGATAGAAGACGATAGTCGCATGAATTCTCCCGCTGGTATCGCAGAGTTGGCACAGCTCTTGAATGAC ACTGACAGCGGATTGAATCAGCTCAGCACCGCCAGAAGCGTGGCAGGTAATAACCTCAAGAGTCTTGAGAGTTACGCCGG ACGACACGCAGAAGAGCAGGTCGTCAATACCTCGGCGCTGTCATTGCTGGAAGATCTGGATTACGCAACGGCGATTACGG AATTTGAAAAGCAGCAGCTTGCATTGAACGCAGTCTCCAATGTGTTTAGCAGAGTTGGTTCTGTGTCTTTGTTCGACTAC TTGTAG
Upstream 100 bases:
>100_bases CAGGTTCCAACAGTCATACCAGGCGTCGGCACGCATTATGACCACGGCCCAGCAAATCTTTGACACCCTGTTTGCGTCGG TGCGTTAAGAGGATTGAGTG
Downstream 100 bases:
>100_bases CGACAGGCACAGCCACTCACTGGAAGCAATTTTGTTAACTAATTTAGCCAAGCTCCAAGCCTTGGCGGTAACACTAGGAA GAGGAACTCAACATGGCTAT
Product: flagellar hook-associated protein FlgL
Products: NA
Alternate protein names: HAP3; Hook-filament junction protein [H]
Number of amino acids: Translated: 401; Mature: 401
Protein sequence:
>401_residues MRISTSQMFTQNTNNILQKQTETAKLLEQLSSGKKVNTSGDDPVAALGIDNLNQQQALVDQFLKNIDYAKNHLGIAESKL GSAEELVTGLREQILRGVNGGLSPSERQMIADEMRGSLQELLNVANTRDESGNFMFSGFKTDTEPFAFDGAGNMVYSGDA GVRDAMISRGIAMGTNVPGDMAFMTSPNALGDYTVNYLSSQAGDFKVQSAAITNPAAHVEDTYTFNFIDNGSGGVNLEVR DSANGLVTTVNNFDATNPVSFNGIDVKLEGTPAAGDSISLAPQAEVSIFDTINKAIALIEDDSRMNSPAGIAELAQLLND TDSGLNQLSTARSVAGNNLKSLESYAGRHAEEQVVNTSALSLLEDLDYATAITEFEKQQLALNAVSNVFSRVGSVSLFDY L
Sequences:
>Translated_401_residues MRISTSQMFTQNTNNILQKQTETAKLLEQLSSGKKVNTSGDDPVAALGIDNLNQQQALVDQFLKNIDYAKNHLGIAESKL GSAEELVTGLREQILRGVNGGLSPSERQMIADEMRGSLQELLNVANTRDESGNFMFSGFKTDTEPFAFDGAGNMVYSGDA GVRDAMISRGIAMGTNVPGDMAFMTSPNALGDYTVNYLSSQAGDFKVQSAAITNPAAHVEDTYTFNFIDNGSGGVNLEVR DSANGLVTTVNNFDATNPVSFNGIDVKLEGTPAAGDSISLAPQAEVSIFDTINKAIALIEDDSRMNSPAGIAELAQLLND TDSGLNQLSTARSVAGNNLKSLESYAGRHAEEQVVNTSALSLLEDLDYATAITEFEKQQLALNAVSNVFSRVGSVSLFDY L >Mature_401_residues MRISTSQMFTQNTNNILQKQTETAKLLEQLSSGKKVNTSGDDPVAALGIDNLNQQQALVDQFLKNIDYAKNHLGIAESKL GSAEELVTGLREQILRGVNGGLSPSERQMIADEMRGSLQELLNVANTRDESGNFMFSGFKTDTEPFAFDGAGNMVYSGDA GVRDAMISRGIAMGTNVPGDMAFMTSPNALGDYTVNYLSSQAGDFKVQSAAITNPAAHVEDTYTFNFIDNGSGGVNLEVR DSANGLVTTVNNFDATNPVSFNGIDVKLEGTPAAGDSISLAPQAEVSIFDTINKAIALIEDDSRMNSPAGIAELAQLLND TDSGLNQLSTARSVAGNNLKSLESYAGRHAEEQVVNTSALSLLEDLDYATAITEFEKQQLALNAVSNVFSRVGSVSLFDY L
Specific function: Unknown
COG id: COG1344
COG function: function code N; Flagellin and related hook-associated proteins
Gene ontology:
Cell location: Secreted. Bacterial flagellum [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial flagellin family [H]
Homologues:
Organism=Escherichia coli, GI1787324, Length=257, Percent_Identity=29.5719844357977, Blast_Score=102, Evalue=4e-23,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013384 - InterPro: IPR001029 [H]
Pfam domain/function: PF00669 Flagellin_N [H]
EC number: NA
Molecular weight: Translated: 42771; Mature: 42771
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRISTSQMFTQNTNNILQKQTETAKLLEQLSSGKKVNTSGDDPVAALGIDNLNQQQALVD CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCCCHHHHHHH QFLKNIDYAKNHLGIAESKLGSAEELVTGLREQILRGVNGGLSPSERQMIADEMRGSLQE HHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH LLNVANTRDESGNFMFSGFKTDTEPFAFDGAGNMVYSGDAGVRDAMISRGIAMGTNVPGD HHHHHCCCCCCCCEEEECCCCCCCCEEECCCCCEEECCCCCHHHHHHHCCCCCCCCCCCC MAFMTSPNALGDYTVNYLSSQAGDFKVQSAAITNPAAHVEDTYTFNFIDNGSGGVNLEVR EEEEECCCCCCHHHHHHHHCCCCCEEEEHHEECCCHHHCCCCEEEEEEECCCCCEEEEEE DSANGLVTTVNNFDATNPVSFNGIDVKLEGTPAAGDSISLAPQAEVSIFDTINKAIALIE CCCCCEEEEECCCCCCCCCEECCEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHEEEE DDSRMNSPAGIAELAQLLNDTDSGLNQLSTARSVAGNNLKSLESYAGRHAEEQVVNTSAL CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH SLLEDLDYATAITEFEKQQLALNAVSNVFSRVGSVSLFDYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC >Mature Secondary Structure MRISTSQMFTQNTNNILQKQTETAKLLEQLSSGKKVNTSGDDPVAALGIDNLNQQQALVD CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCCCHHHHHHH QFLKNIDYAKNHLGIAESKLGSAEELVTGLREQILRGVNGGLSPSERQMIADEMRGSLQE HHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH LLNVANTRDESGNFMFSGFKTDTEPFAFDGAGNMVYSGDAGVRDAMISRGIAMGTNVPGD HHHHHCCCCCCCCEEEECCCCCCCCEEECCCCCEEECCCCCHHHHHHHCCCCCCCCCCCC MAFMTSPNALGDYTVNYLSSQAGDFKVQSAAITNPAAHVEDTYTFNFIDNGSGGVNLEVR EEEEECCCCCCHHHHHHHHCCCCCEEEEHHEECCCHHHCCCCEEEEEEECCCCCEEEEEE DSANGLVTTVNNFDATNPVSFNGIDVKLEGTPAAGDSISLAPQAEVSIFDTINKAIALIE CCCCCEEEEECCCCCCCCCEECCEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHEEEE DDSRMNSPAGIAELAQLLNDTDSGLNQLSTARSVAGNNLKSLESYAGRHAEEQVVNTSAL CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH SLLEDLDYATAITEFEKQQLALNAVSNVFSRVGSVSLFDYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8158647; 8905232; 9278503; 1447789 [H]