| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775315
Identifier: 119775315
GI number: 119775315
Start: 2636912
End: 2637628
Strand: Direct
Name: 119775315
Synonym: Sama_2180
Alternate gene names: NA
Gene position: 2636912-2637628 (Clockwise)
Preceding gene: 119775314
Following gene: 119775316
Centisome position: 61.24
GC content: 53.42
Gene sequence:
>717_bases ATGGACAAGCCTCTTACTCCCGCCGCCCTGGTGCTGGGCGCTTTCCTGGCTGGCGGTCTGGGATTTATCGGACACAGCAT TACTGAAGCCGCCACCAATTTAAAAGCCCTTGACCGCACGGTCAGCGTCAAGGGGCTGGCCGAGCAGGAGGTGATGGCCA ACGTAGCCATCTGGCCAGTACGTTTTGCCGAAGTCGACAACGATTTGGCAAGCCTCTACAACACAGTGCAGCAAAAAACC GACAAGGTGGTGGCCTTTTTAAAAGCCCAGGGGTTCAGCGACGATGAAATCACCCTGACAACACCTGCTATCGAAGACAG AAGCACCCAGGGCTACTCCGACCCCAACCTCAAATATCGCTACGCAGCCAGAGTCACTGTCTCGCTCTATACCCATCAGG TCGATAAATTGCTACAAGCCCGAAAACACATCGGCGTGCTCGCCCGTGATGGCATCGCCATTGGCGGCAACGAATACGAA TCCCGCAGCGAGTTCTTATTCACTGAGCTCAACCGCATCAAACCGGCCATGGTGCAACAGGCCACCGAAAACGCCCGGGA AGTAGCCGAGAAATTTGCCAGGGACTCAAGCTCAAGCCTTGGCAAAATCAAAACCGCCAGCCAGGGGCAATTTATCATCA CTGACAGGGACAGTAATTCGCCCCATATTAAAAACGTGCGAATTGTCAGTACGGTTACCTATTATTTAACTGACTGA
Upstream 100 bases:
>100_bases GGCAAATGAGTGTCAATTCGTAACTCAGTCACACTCTTGATGCAAAGCCTTGGCAATTTGCGTATTCTGGAGCGAAAACG CCGTTGAAACAGGAACTTTC
Downstream 100 bases:
>100_bases TTTTGATTGAAAGGAGCCATTAGGCTCCTTTTTTATGTGTGTGAGTCACATTCCATAATTTTTTTCTAATGAAATGATTG CCGCCGTGGCAACTTTTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MDKPLTPAALVLGAFLAGGLGFIGHSITEAATNLKALDRTVSVKGLAEQEVMANVAIWPVRFAEVDNDLASLYNTVQQKT DKVVAFLKAQGFSDDEITLTTPAIEDRSTQGYSDPNLKYRYAARVTVSLYTHQVDKLLQARKHIGVLARDGIAIGGNEYE SRSEFLFTELNRIKPAMVQQATENAREVAEKFARDSSSSLGKIKTASQGQFIITDRDSNSPHIKNVRIVSTVTYYLTD
Sequences:
>Translated_238_residues MDKPLTPAALVLGAFLAGGLGFIGHSITEAATNLKALDRTVSVKGLAEQEVMANVAIWPVRFAEVDNDLASLYNTVQQKT DKVVAFLKAQGFSDDEITLTTPAIEDRSTQGYSDPNLKYRYAARVTVSLYTHQVDKLLQARKHIGVLARDGIAIGGNEYE SRSEFLFTELNRIKPAMVQQATENAREVAEKFARDSSSSLGKIKTASQGQFIITDRDSNSPHIKNVRIVSTVTYYLTD >Mature_238_residues MDKPLTPAALVLGAFLAGGLGFIGHSITEAATNLKALDRTVSVKGLAEQEVMANVAIWPVRFAEVDNDLASLYNTVQQKT DKVVAFLKAQGFSDDEITLTTPAIEDRSTQGYSDPNLKYRYAARVTVSLYTHQVDKLLQARKHIGVLARDGIAIGGNEYE SRSEFLFTELNRIKPAMVQQATENAREVAEKFARDSSSSLGKIKTASQGQFIITDRDSNSPHIKNVRIVSTVTYYLTD
Specific function: Unknown
COG id: COG2859
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26129; Mature: 26129
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKPLTPAALVLGAFLAGGLGFIGHSITEAATNLKALDRTVSVKGLAEQEVMANVAIWPV CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEE RFAEVDNDLASLYNTVQQKTDKVVAFLKAQGFSDDEITLTTPAIEDRSTQGYSDPNLKYR EHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCEEE YAARVTVSLYTHQVDKLLQARKHIGVLARDGIAIGGNEYESRSEFLFTELNRIKPAMVQQ EEEEEEEHHHHHHHHHHHHHHHHCCEEECCCEEECCCCCCCHHHHHHHHHHHCCHHHHHH ATENAREVAEKFARDSSSSLGKIKTASQGQFIITDRDSNSPHIKNVRIVSTVTYYLTD HHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEEECCCCCCCCCEEEEEEEEEEEECC >Mature Secondary Structure MDKPLTPAALVLGAFLAGGLGFIGHSITEAATNLKALDRTVSVKGLAEQEVMANVAIWPV CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEE RFAEVDNDLASLYNTVQQKTDKVVAFLKAQGFSDDEITLTTPAIEDRSTQGYSDPNLKYR EHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCEEE YAARVTVSLYTHQVDKLLQARKHIGVLARDGIAIGGNEYESRSEFLFTELNRIKPAMVQQ EEEEEEEHHHHHHHHHHHHHHHHCCEEECCCEEECCCCCCCHHHHHHHHHHHCCHHHHHH ATENAREVAEKFARDSSSSLGKIKTASQGQFIITDRDSNSPHIKNVRIVSTVTYYLTD HHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEEECCCCCCCCCEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA