Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775252

Identifier: 119775252

GI number: 119775252

Start: 2560706

End: 2561896

Strand: Direct

Name: 119775252

Synonym: Sama_2117

Alternate gene names: NA

Gene position: 2560706-2561896 (Clockwise)

Preceding gene: 119775251

Following gene: 119775256

Centisome position: 59.47

GC content: 56.42

Gene sequence:

>1191_bases
ATGTCGAATCCAGGATTGCGTTCTGCACTGCTGATGCTGCAACCCAAACTGCCGTTACTTTTACTTGTGGCGCTCACGGC
CTGTGGTGGTGAAGGTGAGAGCACAGCGCCCACAGCGCCGCCCTCAATTGTCGTAACGCCGCCTGCCACTTCGGTGTGCG
ACAACAATAATGGCAGCATCAATCATGAGGCCCTGATGAGCACAAACTGTGCGCGCTTGTCTGACTACCGGCTTTTCAGC
GACAGCCGCAACCCGGCTCTGGCACCCCATACGCCGGGTGTGGCCTACCAGCTCGCCAGTGAGCTTTTTACCGACTATGC
CATTAAACGCCGCTTTATCTTCTTACCCGAAAACAAGCCCATGGTGTTACAAGGAGATGCCCTGTCGTTGCCGGTGGGCA
CCGTGTTGGTTAAAAGCTTCTTACTGCCTTCAGATACCTCAGACACCAATGTTTCTGCTGCCCGGCTTATCGAGACCCGG
CTGCTTATCCACCGCGAGAGTGGATGGACGGCGCTGCCCTATCTGTGGAATGGGGATGAGGCGTACCTTGCCGAAACCGG
TGCCGATGTATCCCACAGTATGAATAGCACAAATGACACGCTGAACTTCACCTATCACGTGCCCAGCCGCGCCGAGTGTA
AGATTTGCCATCAAAGCGCCCGGAATGGCCTGACCACCATAGCGCCCATAGGTCCCAAACCGCTGCTGCTGAACAAAGCC
ATCACCGTTAATGATGAGTCGATTAATCAGCTGACATGGTTTGCATCCCAGGGGCTGCTCACAGGGCTTGGCGAGATTGA
CTCACTGCCACAGACCTTTGCCATTGGGGATGAGCAGCAAAACCTTACCGCGCGGGTGAAAGGCTATCTCGATGTGAACT
GTGCCCATTGCCACAAGGCCGACGGCTTTGCCAGCGTATCGGGACTCAGGCTCGGGTTCGAAACCGATCATCACAGCTAT
CAGTACGGAATTTGTAAGCAGCCGCCCGGTTGGGATGGCGGCGAGCGGGGGCTTTCCTACGACATAGTGCCGGGCAACGG
CGACCACTCGATTCTGGTCTATCGACAGACGCTTTCAGCGGCCAAAGACCGCATGCCGCCAGTGGGACGAGCTTTGGTGC
ACAGTGAAGCCGTAACGCAGATCAGTCGCTGGATAGACTTGATGGCCCCGTCGGTGGGTAACTGTCAGTAG

Upstream 100 bases:

>100_bases
CCCTTATCCATGAATGGATAAAACGCCTGCCTGCGGCAGCCTGCTCCAACTGATGTCACATGGCCGGGGAAACCCGGCCT
TTTCTTAACAGGTACCCAAG

Downstream 100 bases:

>100_bases
TGGGGTAACCGGCAACAAGCCGCTGAAACTTCCCCGGCGGCGCCCCCAACCAATGCTTGAAACTCGCCCGGAAATGGCTA
ACGTCGGTAAAGCCAAGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSNPGLRSALLMLQPKLPLLLLVALTACGGEGESTAPTAPPSIVVTPPATSVCDNNNGSINHEALMSTNCARLSDYRLFS
DSRNPALAPHTPGVAYQLASELFTDYAIKRRFIFLPENKPMVLQGDALSLPVGTVLVKSFLLPSDTSDTNVSAARLIETR
LLIHRESGWTALPYLWNGDEAYLAETGADVSHSMNSTNDTLNFTYHVPSRAECKICHQSARNGLTTIAPIGPKPLLLNKA
ITVNDESINQLTWFASQGLLTGLGEIDSLPQTFAIGDEQQNLTARVKGYLDVNCAHCHKADGFASVSGLRLGFETDHHSY
QYGICKQPPGWDGGERGLSYDIVPGNGDHSILVYRQTLSAAKDRMPPVGRALVHSEAVTQISRWIDLMAPSVGNCQ

Sequences:

>Translated_396_residues
MSNPGLRSALLMLQPKLPLLLLVALTACGGEGESTAPTAPPSIVVTPPATSVCDNNNGSINHEALMSTNCARLSDYRLFS
DSRNPALAPHTPGVAYQLASELFTDYAIKRRFIFLPENKPMVLQGDALSLPVGTVLVKSFLLPSDTSDTNVSAARLIETR
LLIHRESGWTALPYLWNGDEAYLAETGADVSHSMNSTNDTLNFTYHVPSRAECKICHQSARNGLTTIAPIGPKPLLLNKA
ITVNDESINQLTWFASQGLLTGLGEIDSLPQTFAIGDEQQNLTARVKGYLDVNCAHCHKADGFASVSGLRLGFETDHHSY
QYGICKQPPGWDGGERGLSYDIVPGNGDHSILVYRQTLSAAKDRMPPVGRALVHSEAVTQISRWIDLMAPSVGNCQ
>Mature_395_residues
SNPGLRSALLMLQPKLPLLLLVALTACGGEGESTAPTAPPSIVVTPPATSVCDNNNGSINHEALMSTNCARLSDYRLFSD
SRNPALAPHTPGVAYQLASELFTDYAIKRRFIFLPENKPMVLQGDALSLPVGTVLVKSFLLPSDTSDTNVSAARLIETRL
LIHRESGWTALPYLWNGDEAYLAETGADVSHSMNSTNDTLNFTYHVPSRAECKICHQSARNGLTTIAPIGPKPLLLNKAI
TVNDESINQLTWFASQGLLTGLGEIDSLPQTFAIGDEQQNLTARVKGYLDVNCAHCHKADGFASVSGLRLGFETDHHSYQ
YGICKQPPGWDGGERGLSYDIVPGNGDHSILVYRQTLSAAKDRMPPVGRALVHSEAVTQISRWIDLMAPSVGNCQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42764; Mature: 42633

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPGLRSALLMLQPKLPLLLLVALTACGGEGESTAPTAPPSIVVTPPATSVCDNNNGSI
CCCCCHHHHHHEECCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHCCCCCCCC
NHEALMSTNCARLSDYRLFSDSRNPALAPHTPGVAYQLASELFTDYAIKRRFIFLPENKP
CHHHHHCCCCHHHHCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCC
MVLQGDALSLPVGTVLVKSFLLPSDTSDTNVSAARLIETRLLIHRESGWTALPYLWNGDE
EEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHEEEEEECCCCEECCEEECCCE
AYLAETGADVSHSMNSTNDTLNFTYHVPSRAECKICHQSARNGLTTIAPIGPKPLLLNKA
EEEEECCCCHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEE
ITVNDESINQLTWFASQGLLTGLGEIDSLPQTFAIGDEQQNLTARVKGYLDVNCAHCHKA
EEECCCCCHHEEHHHHCCHHHCCHHHHCCCCEEECCCCCCCCEEEEEEEEECCHHHCCCC
DGFASVSGLRLGFETDHHSYQYGICKQPPGWDGGERGLSYDIVPGNGDHSILVYRQTLSA
CCCCEECEEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEHHHHHH
AKDRMPPVGRALVHSEAVTQISRWIDLMAPSVGNCQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SNPGLRSALLMLQPKLPLLLLVALTACGGEGESTAPTAPPSIVVTPPATSVCDNNNGSI
CCCCHHHHHHEECCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHCCCCCCCC
NHEALMSTNCARLSDYRLFSDSRNPALAPHTPGVAYQLASELFTDYAIKRRFIFLPENKP
CHHHHHCCCCHHHHCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCC
MVLQGDALSLPVGTVLVKSFLLPSDTSDTNVSAARLIETRLLIHRESGWTALPYLWNGDE
EEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHEEEEEECCCCEECCEEECCCE
AYLAETGADVSHSMNSTNDTLNFTYHVPSRAECKICHQSARNGLTTIAPIGPKPLLLNKA
EEEEECCCCHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEE
ITVNDESINQLTWFASQGLLTGLGEIDSLPQTFAIGDEQQNLTARVKGYLDVNCAHCHKA
EEECCCCCHHEEHHHHCCHHHCCHHHHCCCCEEECCCCCCCCEEEEEEEEECCHHHCCCC
DGFASVSGLRLGFETDHHSYQYGICKQPPGWDGGERGLSYDIVPGNGDHSILVYRQTLSA
CCCCEECEEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEHHHHHH
AKDRMPPVGRALVHSEAVTQISRWIDLMAPSVGNCQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA