| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is bcr [H]
Identifier: 119775152
GI number: 119775152
Start: 2451798
End: 2453003
Strand: Direct
Name: bcr [H]
Synonym: Sama_2017
Alternate gene names: 119775152
Gene position: 2451798-2453003 (Clockwise)
Preceding gene: 119775151
Following gene: 119775153
Centisome position: 56.94
GC content: 54.89
Gene sequence:
>1206_bases GTGGGTTCACCGACAGAAGCGCAAGCACGCACATCAGGGCTCAACCGGGCCTTTTTAATTCCCTTGCTGGCCGCCATTGT GGCCATTACGCCGCTGGCCATTGATATGTATTTGCCGGCGATGTCGGTCATTGCGCTGAGTCTGGGCTCGGATGTTACCC ATGTGCAGCAGAGTCTCAGTGTGTACCTTGCCGGATACGCCTGTGGCTTGTTGCTTTTTGGCCCAATGGCAGACAGATAC GGCCGCCGTCCGCTGGTGCTGTTTGGTCTTACCGGTTTTGGGATTTGCAGCTTGCTCCTGTCCCATGTCAGCACACCCGA CGCCTTTTTTGGGCTGCGTTTTGTGCAGGCCATGATAGGCTCGGCCGCCACTGTGGTGGTACCCGGCTATGTAAAAATTC TCTATGGGGACAATACGGCCAAGGGCATGTCCTATGTGAGCCTTATTATGATGCTGGCGCCCTTGATTGCCCCCAGTATC GGCAGCTTTATTCTTGGCTTCAGCCATTGGGAGATGATTTTCTATGTTCTCTCGGGCTATGCGCTGCTTGCGCTGACGTT GGTATATTTCGGCTTACAAATTCCTGAGGTAAAAACCGAAAAGCATCAAAGACCCGGTTTTATTGAAGCCTATCGCACCG TACTGACCCGCGCCGGAGTGAAGGGTTTTATCGCCAGCGGCGTACTCACCTCCTTCGCGTTTTTCTGCTACCTCACCGCC TCTCCCTTTGTGTTTATGGAGGTTTACGGGCTGGACAGTCAGCATTTTGCCATGGTGTTTGCATCAAATGTGGGCGCCCT GATGCTCGCCAATATTCTCAACTCCCGGATTGTGGGTCGTTTCGGCTCGCTGCGGCTACTTAGAGCCTCGACCCTGTGCG GTCTGGTATTCGCCCTGCTGCTGTGCGCCGCTAACACCATTGAACTGGGGCTGTATGGTACTCTGCTGACGCTGGTCCCC TTGATGGCTTGCCTCGGCATTATGTCGGTGAATGCTGACGCTATTGTGCTGCTCAAGTTTCAGCGGGAAACCGGCACTGC AACCGCCGTGATAGGCACCCTCAGATTTGGGATTGGTGCATTGGCCGGGCCTTTGCTGGCTGCATTTTACACAGGCACTG CCCTGCCATTTTCGGCACTGATGTTGTTTGCCGTACTGCTGGCCGGTGCCTGTCAGCACCTCGCCAGACGCACCTCGATT GAATAA
Upstream 100 bases:
>100_bases TGCGGGCTCAGTCACCTAGGATCGGAGATTCGCCGCGGCTGGGGAGCCGCCGCACATAGCTTTATCGCCTGATTATTCAT TTTCACCACGAGAGGTAACA
Downstream 100 bases:
>100_bases TCTGCAATTGCTTGCTTTCAGGCCAAATCCCGTACATCCGGCCTGAAAGCGATTTATTTACCTTATAATTCATTACTTTA TAAACAAAATGCTTACACAT
Product: bicyclomycin resistance protein
Products: Proton [Cytoplasm]; multidrug [Periplasm] [C]
Alternate protein names: Sulfonamide resistance protein [H]
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MGSPTEAQARTSGLNRAFLIPLLAAIVAITPLAIDMYLPAMSVIALSLGSDVTHVQQSLSVYLAGYACGLLLFGPMADRY GRRPLVLFGLTGFGICSLLLSHVSTPDAFFGLRFVQAMIGSAATVVVPGYVKILYGDNTAKGMSYVSLIMMLAPLIAPSI GSFILGFSHWEMIFYVLSGYALLALTLVYFGLQIPEVKTEKHQRPGFIEAYRTVLTRAGVKGFIASGVLTSFAFFCYLTA SPFVFMEVYGLDSQHFAMVFASNVGALMLANILNSRIVGRFGSLRLLRASTLCGLVFALLLCAANTIELGLYGTLLTLVP LMACLGIMSVNADAIVLLKFQRETGTATAVIGTLRFGIGALAGPLLAAFYTGTALPFSALMLFAVLLAGACQHLARRTSI E
Sequences:
>Translated_401_residues MGSPTEAQARTSGLNRAFLIPLLAAIVAITPLAIDMYLPAMSVIALSLGSDVTHVQQSLSVYLAGYACGLLLFGPMADRY GRRPLVLFGLTGFGICSLLLSHVSTPDAFFGLRFVQAMIGSAATVVVPGYVKILYGDNTAKGMSYVSLIMMLAPLIAPSI GSFILGFSHWEMIFYVLSGYALLALTLVYFGLQIPEVKTEKHQRPGFIEAYRTVLTRAGVKGFIASGVLTSFAFFCYLTA SPFVFMEVYGLDSQHFAMVFASNVGALMLANILNSRIVGRFGSLRLLRASTLCGLVFALLLCAANTIELGLYGTLLTLVP LMACLGIMSVNADAIVLLKFQRETGTATAVIGTLRFGIGALAGPLLAAFYTGTALPFSALMLFAVLLAGACQHLARRTSI E >Mature_400_residues GSPTEAQARTSGLNRAFLIPLLAAIVAITPLAIDMYLPAMSVIALSLGSDVTHVQQSLSVYLAGYACGLLLFGPMADRYG RRPLVLFGLTGFGICSLLLSHVSTPDAFFGLRFVQAMIGSAATVVVPGYVKILYGDNTAKGMSYVSLIMMLAPLIAPSIG SFILGFSHWEMIFYVLSGYALLALTLVYFGLQIPEVKTEKHQRPGFIEAYRTVLTRAGVKGFIASGVLTSFAFFCYLTAS PFVFMEVYGLDSQHFAMVFASNVGALMLANILNSRIVGRFGSLRLLRASTLCGLVFALLLCAANTIELGLYGTLLTLVPL MACLGIMSVNADAIVLLKFQRETGTATAVIGTLRFGIGALAGPLLAAFYTGTALPFSALMLFAVLLAGACQHLARRTSIE
Specific function: Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance. Probable membrane translocase [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Bcr/CmlA family [H]
Homologues:
Organism=Escherichia coli, GI1788509, Length=368, Percent_Identity=33.1521739130435, Blast_Score=187, Evalue=1e-48, Organism=Escherichia coli, GI48994889, Length=343, Percent_Identity=30.9037900874636, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI1790146, Length=297, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1787065, Length=356, Percent_Identity=26.685393258427, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1790794, Length=282, Percent_Identity=23.758865248227, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI87082312, Length=341, Percent_Identity=25.8064516129032, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004812 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004734 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 42698; Mature: 42567
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSPTEAQARTSGLNRAFLIPLLAAIVAITPLAIDMYLPAMSVIALSLGSDVTHVQQSLS CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH VYLAGYACGLLLFGPMADRYGRRPLVLFGLTGFGICSLLLSHVSTPDAFFGLRFVQAMIG HHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC SAATVVVPGYVKILYGDNTAKGMSYVSLIMMLAPLIAPSIGSFILGFSHWEMIFYVLSGY CCCEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALLALTLVYFGLQIPEVKTEKHQRPGFIEAYRTVLTRAGVKGFIASGVLTSFAFFCYLTA HHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC SPFVFMEVYGLDSQHFAMVFASNVGALMLANILNSRIVGRFGSLRLLRASTLCGLVFALL CCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LCAANTIELGLYGTLLTLVPLMACLGIMSVNADAIVLLKFQRETGTATAVIGTLRFGIGA HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH LAGPLLAAFYTGTALPFSALMLFAVLLAGACQHLARRTSIE HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GSPTEAQARTSGLNRAFLIPLLAAIVAITPLAIDMYLPAMSVIALSLGSDVTHVQQSLS CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH VYLAGYACGLLLFGPMADRYGRRPLVLFGLTGFGICSLLLSHVSTPDAFFGLRFVQAMIG HHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC SAATVVVPGYVKILYGDNTAKGMSYVSLIMMLAPLIAPSIGSFILGFSHWEMIFYVLSGY CCCEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALLALTLVYFGLQIPEVKTEKHQRPGFIEAYRTVLTRAGVKGFIASGVLTSFAFFCYLTA HHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC SPFVFMEVYGLDSQHFAMVFASNVGALMLANILNSRIVGRFGSLRLLRASTLCGLVFALL CCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LCAANTIELGLYGTLLTLVPLMACLGIMSVNADAIVLLKFQRETGTATAVIGTLRFGIGA HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH LAGPLLAAFYTGTALPFSALMLFAVLLAGACQHLARRTSIE HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; multidrug [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + multidrug [Cytoplasm] = Proton [Cytoplasm] + multidrug [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8486276; 9278503; 2694948 [H]