Click here to switch to the map view.

The map label for this gene is ydeF [H]

Identifier: 119775151

GI number: 119775151

Start: 2450269

End: 2451612

Strand: Direct

Name: ydeF [H]

Synonym: Sama_2016

Alternate gene names: 119775151

Gene position: 2450269-2451612 (Clockwise)

Preceding gene: 119775148

Following gene: 119775152

Centisome position: 56.9

GC content: 56.62

Gene sequence:

>1344_bases
ATGCGTACAATTTGGACGCCTACGCTGGAAAACTTCAGTGGCAGTAAGTATGAACAGCTGGCCAATGCCATAGGTGACGC
CATTACCCGGGGAGAACTGGCGCCGGGTTCCAAACTGCCGCCTCAGCGCCGACTCGCCGATGCACTGGGCGTCACCCTGG
GCACAGTCACCCGCGCTTATACCAAAGCCATTTATCGCGGTTGGGTGGAGGCGCGTGTAGGTGATGGCACTTATGTACGC
ATGGCGGAGCCCAAAAGCACGGGCCCCCTGGATTTGGCAACCTGCCAGCAGGCGGTAACCGACCAGGCCGCTTTCCTCGG
AGAAGTGATGAGCCGCATGGGGCGCGACCCGGTTCGCTTGGCTGGTCTGCTTGATTACCACACGGCAAATCTTGAGGCGC
AGCAAGAAACTGTGCTGACGTTTTTAGCCCGCTCCGGCGTCGATGATTTTGGGGGGAAGCTCGTTTTTACCCATGGGGCA
CAGCAAGGGCTGTTTGCCGCACTCGCGGCTATATGTGAACCTGGCGACTGGGTATTACATGAGGCCTGGTGTTATCCGGG
GTTGAATCGCGCCGCCGAAGCCCTGAGCCTGAATCTGTGCGGCGTGTCATTACTGGATGATGGTCTTAATCTGGATGAAC
TTGCCGCCTGCATCGATAAACACAAACCCAAGGCCATTTATCTGACCCCTAACAGCCAGAATCCCGGCTGCATCGGCTAC
AGTGGTGCGCAGCGGCAACGCATTCTGGCCCTTGCCAGAGCCCACGACATCATCATTATTGAAGATGATGTGAATTACTG
CACATCACAGGAGTGGAGCGCCCCCATTTGGCAACTGGCCGCCGATGCACAATCTGTGGTGTATTTGAGCAGTCTGTCGA
AGCGGTTTGCCGGTGGTATTCGATTTGGCTTTATGTTGCTGCCCGCAAGATTGCAGCCCAGGGTCAATCGCATCATACAT
GCCCACTGCTGGATGGTGTCGCCGCTGCTGATTGAAATTGGCTGTGAACTTATTCGCTCGGGGGGCATTCACCAACACAG
AGATGCCTGGATAGCCTCACTGCAACAGCGATTTTTGACCATGGCAGAGTCCCTCGATTTGGAGGCCAAAAGTCGGGGGC
TCAACGGCCGCCTGACACTGCCAGAAGGTTTCAGGGCCAGTAATGTAATAGCGGCGCTTGCCGCCAAAGGCATACTGGCC
CGCAGCCTCGCCGACTTTGGCGGACCGGCAAACGGGATCAGATTCAGCCTGGGTCGTATTCCACGGGGCGAAGAAGATGA
GGTATTCGACAGGATACAAAGCACCCTGACCGACGTCCTCAATCAGGGCATTGCCGTGGTTTAA

Upstream 100 bases:

>100_bases
TGAAACAAACTCCAAATTGTATGGATACAATAAAAGGGTGATTCCGAGCAATTATTGCCATACTATAGCCCCAACAAAAC
AGATCAATCGGAATATTGTC

Downstream 100 bases:

>100_bases
ATGTACACCCCATGCAATGGCTGCGGACAAAGCCATTGTGAGGCAACAATTGCTTTCAATTGTCTCTCCCGGCGGTGCTG
GCAGTTGCGGGCTCAGTCAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MRTIWTPTLENFSGSKYEQLANAIGDAITRGELAPGSKLPPQRRLADALGVTLGTVTRAYTKAIYRGWVEARVGDGTYVR
MAEPKSTGPLDLATCQQAVTDQAAFLGEVMSRMGRDPVRLAGLLDYHTANLEAQQETVLTFLARSGVDDFGGKLVFTHGA
QQGLFAALAAICEPGDWVLHEAWCYPGLNRAAEALSLNLCGVSLLDDGLNLDELAACIDKHKPKAIYLTPNSQNPGCIGY
SGAQRQRILALARAHDIIIIEDDVNYCTSQEWSAPIWQLAADAQSVVYLSSLSKRFAGGIRFGFMLLPARLQPRVNRIIH
AHCWMVSPLLIEIGCELIRSGGIHQHRDAWIASLQQRFLTMAESLDLEAKSRGLNGRLTLPEGFRASNVIAALAAKGILA
RSLADFGGPANGIRFSLGRIPRGEEDEVFDRIQSTLTDVLNQGIAVV

Sequences:

>Translated_447_residues
MRTIWTPTLENFSGSKYEQLANAIGDAITRGELAPGSKLPPQRRLADALGVTLGTVTRAYTKAIYRGWVEARVGDGTYVR
MAEPKSTGPLDLATCQQAVTDQAAFLGEVMSRMGRDPVRLAGLLDYHTANLEAQQETVLTFLARSGVDDFGGKLVFTHGA
QQGLFAALAAICEPGDWVLHEAWCYPGLNRAAEALSLNLCGVSLLDDGLNLDELAACIDKHKPKAIYLTPNSQNPGCIGY
SGAQRQRILALARAHDIIIIEDDVNYCTSQEWSAPIWQLAADAQSVVYLSSLSKRFAGGIRFGFMLLPARLQPRVNRIIH
AHCWMVSPLLIEIGCELIRSGGIHQHRDAWIASLQQRFLTMAESLDLEAKSRGLNGRLTLPEGFRASNVIAALAAKGILA
RSLADFGGPANGIRFSLGRIPRGEEDEVFDRIQSTLTDVLNQGIAVV
>Mature_447_residues
MRTIWTPTLENFSGSKYEQLANAIGDAITRGELAPGSKLPPQRRLADALGVTLGTVTRAYTKAIYRGWVEARVGDGTYVR
MAEPKSTGPLDLATCQQAVTDQAAFLGEVMSRMGRDPVRLAGLLDYHTANLEAQQETVLTFLARSGVDDFGGKLVFTHGA
QQGLFAALAAICEPGDWVLHEAWCYPGLNRAAEALSLNLCGVSLLDDGLNLDELAACIDKHKPKAIYLTPNSQNPGCIGY
SGAQRQRILALARAHDIIIIEDDVNYCTSQEWSAPIWQLAADAQSVVYLSSLSKRFAGGIRFGFMLLPARLQPRVNRIIH
AHCWMVSPLLIEIGCELIRSGGIHQHRDAWIASLQQRFLTMAESLDLEAKSRGLNGRLTLPEGFRASNVIAALAAKGILA
RSLADFGGPANGIRFSLGRIPRGEEDEVFDRIQSTLTDVLNQGIAVV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=188, Percent_Identity=31.3829787234043, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI33469970, Length=188, Percent_Identity=31.3829787234043, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1787710, Length=323, Percent_Identity=26.625386996904, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1790797, Length=364, Percent_Identity=24.4505494505494, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 48563; Mature: 48563

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS50949 HTH_GNTR ; PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIWTPTLENFSGSKYEQLANAIGDAITRGELAPGSKLPPQRRLADALGVTLGTVTRAY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TKAIYRGWVEARVGDGTYVRMAEPKSTGPLDLATCQQAVTDQAAFLGEVMSRMGRDPVRL
HHHHHHHHHHEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
AGLLDYHTANLEAQQETVLTFLARSGVDDFGGKLVFTHGAQQGLFAALAAICEPGDWVLH
HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCCEEEEECCCHHHHHHHHHHHCCCCCCEEE
EAWCYPGLNRAAEALSLNLCGVSLLDDGLNLDELAACIDKHKPKAIYLTPNSQNPGCIGY
HHHCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCEECC
SGAQRQRILALARAHDIIIIEDDVNYCTSQEWSAPIWQLAADAQSVVYLSSLSKRFAGGI
CCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
RFGFMLLPARLQPRVNRIIHAHCWMVSPLLIEIGCELIRSGGIHQHRDAWIASLQQRFLT
HHHHHHHCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
MAESLDLEAKSRGLNGRLTLPEGFRASNVIAALAAKGILARSLADFGGPANGIRFSLGRI
HHHHCCCHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
PRGEEDEVFDRIQSTLTDVLNQGIAVV
CCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRTIWTPTLENFSGSKYEQLANAIGDAITRGELAPGSKLPPQRRLADALGVTLGTVTRAY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TKAIYRGWVEARVGDGTYVRMAEPKSTGPLDLATCQQAVTDQAAFLGEVMSRMGRDPVRL
HHHHHHHHHHEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
AGLLDYHTANLEAQQETVLTFLARSGVDDFGGKLVFTHGAQQGLFAALAAICEPGDWVLH
HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCCEEEEECCCHHHHHHHHHHHCCCCCCEEE
EAWCYPGLNRAAEALSLNLCGVSLLDDGLNLDELAACIDKHKPKAIYLTPNSQNPGCIGY
HHHCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCEECC
SGAQRQRILALARAHDIIIIEDDVNYCTSQEWSAPIWQLAADAQSVVYLSSLSKRFAGGI
CCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
RFGFMLLPARLQPRVNRIIHAHCWMVSPLLIEIGCELIRSGGIHQHRDAWIASLQQRFLT
HHHHHHHCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
MAESLDLEAKSRGLNGRLTLPEGFRASNVIAALAAKGILARSLADFGGPANGIRFSLGRI
HHHHCCCHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
PRGEEDEVFDRIQSTLTDVLNQGIAVV
CCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]