Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is dgkA [H]

Identifier: 119775131

GI number: 119775131

Start: 2426623

End: 2426994

Strand: Direct

Name: dgkA [H]

Synonym: Sama_1996

Alternate gene names: 119775131

Gene position: 2426623-2426994 (Clockwise)

Preceding gene: 119775128

Following gene: 119775133

Centisome position: 56.35

GC content: 53.49

Gene sequence:

>372_bases
ATGAAACCAGCCAATAACCATGGCTTCAGGCGCGTTATTCGTGCGACCGGCTTTTCTTTTAAAGGGTTAAAGTCCGCCTG
GGTCCACGAAGCGGCCTTTCGGCAGGAACTGATCCTTGCATGCGTGATGGTGCCGTTTGCACTTTGGCTGGATGTGAGTA
CGGTTGAAAAACTACTGATGATCATGGCGGTGTTCATTGTGCTCATCACTGAACTGCTGAACTCTGCCATAGAAGCGGTT
GTGGACCGAATCGGGGATGAAATCCACCCCCTTTCGGGTCAAGCCAAGGACATAGCCTCAGCAGCCGTGTTTATGAGCCT
GGCACTGTGCGCCCTGGTGTGGGCCTTTATCCTGCTGCCGCTGCTCTGGTAA

Upstream 100 bases:

>100_bases
TTTTATGGCCAGCCGCGCTTTTACTGAACGTTCAGCATAATGGCGTCGTCTTCGGTCATGTTTGAGCCCGACTGTTGGGC
TTGGCAATCTGGGGGAATAC

Downstream 100 bases:

>100_bases
TTGCTGCGCTTTTTTACTCAGGCGCTGAGCTCTTCAGCGCCTTCATCAGACTCCCGCGCCAGAAAACTCACCGCCCGCTC
TATTTGCGATAGTCTGTCAT

Product: diacylglycerol kinase

Products: NA

Alternate protein names: DAGK; Diglyceride kinase; DGK [H]

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKPANNHGFRRVIRATGFSFKGLKSAWVHEAAFRQELILACVMVPFALWLDVSTVEKLLMIMAVFIVLITELLNSAIEAV
VDRIGDEIHPLSGQAKDIASAAVFMSLALCALVWAFILLPLLW

Sequences:

>Translated_123_residues
MKPANNHGFRRVIRATGFSFKGLKSAWVHEAAFRQELILACVMVPFALWLDVSTVEKLLMIMAVFIVLITELLNSAIEAV
VDRIGDEIHPLSGQAKDIASAAVFMSLALCALVWAFILLPLLW
>Mature_123_residues
MKPANNHGFRRVIRATGFSFKGLKSAWVHEAAFRQELILACVMVPFALWLDVSTVEKLLMIMAVFIVLITELLNSAIEAV
VDRIGDEIHPLSGQAKDIASAAVFMSLALCALVWAFILLPLLW

Specific function: Recycling of diacylglycerol produced during the turnover of membrane phospholipid [H]

COG id: COG0818

COG function: function code M; Diacylglycerol kinase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial diacylglycerol kinase family [H]

Homologues:

Organism=Escherichia coli, GI1790475, Length=114, Percent_Identity=51.7543859649123, Blast_Score=128, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000829 [H]

Pfam domain/function: PF01219 DAGK_prokar [H]

EC number: =2.7.1.107 [H]

Molecular weight: Translated: 13623; Mature: 13623

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS01069 DAGK_PROKAR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPANNHGFRRVIRATGFSFKGLKSAWVHEAAFRQELILACVMVPFALWLDVSTVEKLLM
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMAVFIVLITELLNSAIEAVVDRIGDEIHPLSGQAKDIASAAVFMSLALCALVWAFILLP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLW
HCC
>Mature Secondary Structure
MKPANNHGFRRVIRATGFSFKGLKSAWVHEAAFRQELILACVMVPFALWLDVSTVEKLLM
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMAVFIVLITELLNSAIEAVVDRIGDEIHPLSGQAKDIASAAVFMSLALCALVWAFILLP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLW
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]