| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is wzb [C]
Identifier: 119775129
GI number: 119775129
Start: 2424820
End: 2425296
Strand: Reverse
Name: wzb [C]
Synonym: Sama_1994
Alternate gene names: 119775129
Gene position: 2425296-2424820 (Counterclockwise)
Preceding gene: 119775130
Following gene: 119775126
Centisome position: 56.32
GC content: 54.51
Gene sequence:
>477_bases ATGACCAGTACACCCGGTTCGATTCTATTTGTATGCATGGGCAATATCTGCCGTTCTCCCAGCGCCGAAGCAGTGTTTCG CCAGCGTGCCATCCGCGCAGGACTTGATTTGGTGATTGATTCTGCCGGCACCATTGGCTACCACCAGGGAGAGGCCCCCG ACGCCCGCTCGGTAAAAGCAGGCGAAGCTCGGGGTTATGATTTCTCTGGGATGCGTGCACGGCAGGTGAAGGACAGCGAT TTCATGCGTTTTGACCTGATTCTAGCCGCAGACAAGGATAACCTTGCTGAGCTCAAGCGCCGCTGTCCGGCTGAATTCAG GCATAAGTTACGGCTCATCTTAAGTTTTGGCGAATCGGACATTGAGGAAGTTCCCGACCCATACTACGGCGGGAACGCAG GGTTTGAGCGTGTGCTCGATCTGCTGGAACACAGCAGTGATGCCTTGATAGCCGCCATTAAGGCGTTGGAAAAATGA
Upstream 100 bases:
>100_bases AATATCATGGGCTCACTGATAAAGGGCTTCCCAAGGGCGCGCGATTTCTGCGTGTGCGTCCGATGGAATGAATTCCCGCA GATAAGAGACAAAGACACAA
Downstream 100 bases:
>100_bases CATTAAAAAAGGGCCATCAGGCCCTTTGGGTTTGAGTACACCTTTTAACGCTGGTCCGGTTTGGCATGGGTGCACAGGCT AACGCCTCGTTGCTGTGATA
Product: protein tyrosine phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 158; Mature: 157
Protein sequence:
>158_residues MTSTPGSILFVCMGNICRSPSAEAVFRQRAIRAGLDLVIDSAGTIGYHQGEAPDARSVKAGEARGYDFSGMRARQVKDSD FMRFDLILAADKDNLAELKRRCPAEFRHKLRLILSFGESDIEEVPDPYYGGNAGFERVLDLLEHSSDALIAAIKALEK
Sequences:
>Translated_158_residues MTSTPGSILFVCMGNICRSPSAEAVFRQRAIRAGLDLVIDSAGTIGYHQGEAPDARSVKAGEARGYDFSGMRARQVKDSD FMRFDLILAADKDNLAELKRRCPAEFRHKLRLILSFGESDIEEVPDPYYGGNAGFERVLDLLEHSSDALIAAIKALEK >Mature_157_residues TSTPGSILFVCMGNICRSPSAEAVFRQRAIRAGLDLVIDSAGTIGYHQGEAPDARSVKAGEARGYDFSGMRARQVKDSDF MRFDLILAADKDNLAELKRRCPAEFRHKLRLILSFGESDIEEVPDPYYGGNAGFERVLDLLEHSSDALIAAIKALEK
Specific function: Dephosphorylates Wzc. Required For The Extracellular Polysaccharide Colanic Acid Synthesis. Probably Involved In The Export Of Colanic Acid From The Cell To Medium. [C]
COG id: COG0394
COG function: function code T; Protein-tyrosine-phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the low molecular weight phosphotyrosine protein phosphatase family [H]
Homologues:
Organism=Homo sapiens, GI6005988, Length=136, Percent_Identity=38.9705882352941, Blast_Score=96, Evalue=1e-20, Organism=Homo sapiens, GI4757714, Length=136, Percent_Identity=40.4411764705882, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1788375, Length=151, Percent_Identity=35.0993377483444, Blast_Score=75, Evalue=2e-15, Organism=Escherichia coli, GI87081812, Length=141, Percent_Identity=34.0425531914894, Blast_Score=63, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6325330, Length=153, Percent_Identity=32.6797385620915, Blast_Score=90, Evalue=2e-19, Organism=Drosophila melanogaster, GI78706770, Length=140, Percent_Identity=40.7142857142857, Blast_Score=98, Evalue=2e-21, Organism=Drosophila melanogaster, GI78706772, Length=140, Percent_Identity=40.7142857142857, Blast_Score=98, Evalue=2e-21, Organism=Drosophila melanogaster, GI78706766, Length=133, Percent_Identity=36.8421052631579, Blast_Score=87, Evalue=4e-18, Organism=Drosophila melanogaster, GI78706768, Length=133, Percent_Identity=36.8421052631579, Blast_Score=87, Evalue=4e-18, Organism=Drosophila melanogaster, GI78706764, Length=125, Percent_Identity=36, Blast_Score=85, Evalue=2e-17, Organism=Drosophila melanogaster, GI78711846, Length=146, Percent_Identity=33.5616438356164, Blast_Score=77, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000106 - InterPro: IPR017867 [H]
Pfam domain/function: PF01451 LMWPc [H]
EC number: =3.1.3.48 [H]
Molecular weight: Translated: 17367; Mature: 17236
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTPGSILFVCMGNICRSPSAEAVFRQRAIRAGLDLVIDSAGTIGYHQGEAPDARSVKA CCCCCCHHHHEEHHHHHCCCCHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCCCCCCCC GEARGYDFSGMRARQVKDSDFMRFDLILAADKDNLAELKRRCPAEFRHKLRLILSFGESD CCCCCCCCCCCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHCCCHH IEEVPDPYYGGNAGFERVLDLLEHSSDALIAAIKALEK HHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure TSTPGSILFVCMGNICRSPSAEAVFRQRAIRAGLDLVIDSAGTIGYHQGEAPDARSVKA CCCCCHHHHEEHHHHHCCCCHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCCCCCCCC GEARGYDFSGMRARQVKDSDFMRFDLILAADKDNLAELKRRCPAEFRHKLRLILSFGESD CCCCCCCCCCCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHCCCHH IEEVPDPYYGGNAGFERVLDLLEHSSDALIAAIKALEK HHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]