| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is msrAB [H]
Identifier: 119775126
GI number: 119775126
Start: 2421680
End: 2422609
Strand: Reverse
Name: msrAB [H]
Synonym: Sama_1991
Alternate gene names: 119775126
Gene position: 2422609-2421680 (Counterclockwise)
Preceding gene: 119775129
Following gene: 119775123
Centisome position: 56.26
GC content: 51.18
Gene sequence:
>930_bases ATGAGAACGCTGAACGAATTTGAACGTTATGTAATCGAAGAGAAGGGGACAGAGCGCCCTTTCAGTGGTGAGTATTATCT GCATAATGCCCAGGGCGTTTACTGTTGCAGGAAATGCGATGCGCCGCTGTATTTATCAGAGCACAAGTTCCACGCCCATT GTGGCTGGCCTGCCTTTGATGATGAAATTCCTGGCGCTGTGGCAAGGCATACGGATGCAGACGGTCACAGGGTGGAAATC GTCTGCGCATCCTGTGGCGGTCATTTGGGGCATGTATTTGAGGGTGAGTATCTTACTGAGAAAAACCTGAGGCACTGCGT CAACTCGGTGTCCATGGTGTTTAAGAGCCATGAAGAGATGGAACAGGGACAGAAAACTATAAGCGAGGCCGGCCCAACTG CCAATGCCTTTGCCACCTTTGGCGCCGGTTGTTTTTGGTGTGTTGAAGCGATTTTTTTAGCATTGAAAGGGGTGGTCAGC GTCAAACCAGGCTACGCTGGTGGCCCTGCAGCCGATGCCAATTACAAAAGAGTGTGCGACGGTGATACAGGTCATGCGGA AGTCGTTCATATCGAGTACAAGCCGGACGAGGTAAGCTTTGAGACTCTGATCGAGGTGTTCTTTCAAAGCCACGACCCCA CCACCCTTAACCGCCAGGGTAACGATGTGGGAACCCAGTATCGTTCGGTGATATTTGCACATAATGAACCGCAGGCCGAG GCCGCAGCAAAGGCGATAGAAGCCTTGACCAAGTCGGGCGCTTTCGATAACCCCATAGTGACCGAAGTGGTGGCTTTCGA TGAGTTTTATCCCGCGGAAGACTATCACCATGACTATTTTGCCCGTAACGGCGAGCAGAGGTACTGTGCCCTGGTGGTAA AACCCAAAGTCGACAAGTTTAAAAAGGCCTTTGCATCACTGCTGAAATAG
Upstream 100 bases:
>100_bases GCTTTGGCGTAAATAAAGTATCGGTGGGCTTACCCGGTGCAATATAAGGCTCAAAACCCGGGTCAGCTCAGAATGAGTCT CTTTAGCCGTTGGAGTAGCA
Downstream 100 bases:
>100_bases CCTCATAGCTGAAATTGTCGGTATCAAAAAAAGCGGCCCGAGGGCCGCTTTCTTGATGGGTATGGATTCCCTTTAATCCA ACTTGTCGTCGGCCACCCGA
Product: bifunctional methionine sulfoxide reductase B/A protein
Products: NA
Alternate protein names: Peptide methionine sulfoxide reductase msrB; Peptide-methionine (R)-S-oxide reductase; Peptide methionine sulfoxide reductase msrA; Protein-methionine-S-oxide reductase; Peptide-methionine (S)-S-oxide reductase; Peptide Met(O) reductase [H]
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MRTLNEFERYVIEEKGTERPFSGEYYLHNAQGVYCCRKCDAPLYLSEHKFHAHCGWPAFDDEIPGAVARHTDADGHRVEI VCASCGGHLGHVFEGEYLTEKNLRHCVNSVSMVFKSHEEMEQGQKTISEAGPTANAFATFGAGCFWCVEAIFLALKGVVS VKPGYAGGPAADANYKRVCDGDTGHAEVVHIEYKPDEVSFETLIEVFFQSHDPTTLNRQGNDVGTQYRSVIFAHNEPQAE AAAKAIEALTKSGAFDNPIVTEVVAFDEFYPAEDYHHDYFARNGEQRYCALVVKPKVDKFKKAFASLLK
Sequences:
>Translated_309_residues MRTLNEFERYVIEEKGTERPFSGEYYLHNAQGVYCCRKCDAPLYLSEHKFHAHCGWPAFDDEIPGAVARHTDADGHRVEI VCASCGGHLGHVFEGEYLTEKNLRHCVNSVSMVFKSHEEMEQGQKTISEAGPTANAFATFGAGCFWCVEAIFLALKGVVS VKPGYAGGPAADANYKRVCDGDTGHAEVVHIEYKPDEVSFETLIEVFFQSHDPTTLNRQGNDVGTQYRSVIFAHNEPQAE AAAKAIEALTKSGAFDNPIVTEVVAFDEFYPAEDYHHDYFARNGEQRYCALVVKPKVDKFKKAFASLLK >Mature_309_residues MRTLNEFERYVIEEKGTERPFSGEYYLHNAQGVYCCRKCDAPLYLSEHKFHAHCGWPAFDDEIPGAVARHTDADGHRVEI VCASCGGHLGHVFEGEYLTEKNLRHCVNSVSMVFKSHEEMEQGQKTISEAGPTANAFATFGAGCFWCVEAIFLALKGVVS VKPGYAGGPAADANYKRVCDGDTGHAEVVHIEYKPDEVSFETLIEVFFQSHDPTTLNRQGNDVGTQYRSVIFAHNEPQAE AAAKAIEALTKSGAFDNPIVTEVVAFDEFYPAEDYHHDYFARNGEQRYCALVVKPKVDKFKKAFASLLK
Specific function: Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine [H]
COG id: COG0225
COG function: function code O; Peptide methionine sulfoxide reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the msrA Met sulfoxide reductase family [H]
Homologues:
Organism=Homo sapiens, GI6912516, Length=171, Percent_Identity=46.1988304093567, Blast_Score=147, Evalue=1e-35, Organism=Homo sapiens, GI208609995, Length=171, Percent_Identity=46.1988304093567, Blast_Score=147, Evalue=1e-35, Organism=Homo sapiens, GI208609993, Length=111, Percent_Identity=47.7477477477478, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI301336164, Length=117, Percent_Identity=42.7350427350427, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI301336162, Length=117, Percent_Identity=42.7350427350427, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI73089054, Length=117, Percent_Identity=42.7350427350427, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI37620216, Length=117, Percent_Identity=42.7350427350427, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI117606353, Length=125, Percent_Identity=39.2, Blast_Score=84, Evalue=1e-16, Organism=Escherichia coli, GI1790665, Length=156, Percent_Identity=44.8717948717949, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1788077, Length=125, Percent_Identity=40, Blast_Score=91, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17533973, Length=147, Percent_Identity=34.0136054421769, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17553450, Length=118, Percent_Identity=38.9830508474576, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI115532676, Length=118, Percent_Identity=38.9830508474576, Blast_Score=80, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6319816, Length=120, Percent_Identity=51.6666666666667, Blast_Score=118, Evalue=1e-27, Organism=Saccharomyces cerevisiae, GI6320881, Length=173, Percent_Identity=37.5722543352601, Blast_Score=113, Evalue=4e-26, Organism=Drosophila melanogaster, GI24664627, Length=168, Percent_Identity=33.9285714285714, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24645799, Length=118, Percent_Identity=44.9152542372881, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI45553335, Length=118, Percent_Identity=44.9152542372881, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI21356369, Length=118, Percent_Identity=44.9152542372881, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24664631, Length=169, Percent_Identity=34.3195266272189, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24645801, Length=129, Percent_Identity=41.0852713178295, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24645804, Length=129, Percent_Identity=41.0852713178295, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI45553131, Length=159, Percent_Identity=32.7044025157233, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI221378664, Length=117, Percent_Identity=41.8803418803419, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI221378662, Length=124, Percent_Identity=39.5161290322581, Blast_Score=87, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002579 - InterPro: IPR011057 - InterPro: IPR002569 [H]
Pfam domain/function: PF01625 PMSR; PF01641 SelR [H]
EC number: =1.8.4.12; =1.8.4.11 [H]
Molecular weight: Translated: 34391; Mature: 34391
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTLNEFERYVIEEKGTERPFSGEYYLHNAQGVYCCRKCDAPLYLSEHKFHAHCGWPAFD CCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCEEECCCCEEEECCCCCCC DEIPGAVARHTDADGHRVEIVCASCGGHLGHVFEGEYLTEKNLRHCVNSVSMVFKSHEEM CCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH EQGQKTISEAGPTANAFATFGAGCFWCVEAIFLALKGVVSVKPGYAGGPAADANYKRVCD HHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCC GDTGHAEVVHIEYKPDEVSFETLIEVFFQSHDPTTLNRQGNDVGTQYRSVIFAHNEPQAE CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEECCCCHHH AAAKAIEALTKSGAFDNPIVTEVVAFDEFYPAEDYHHDYFARNGEQRYCALVVKPKVDKF HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEEEECCCHHHH KKAFASLLK HHHHHHHCC >Mature Secondary Structure MRTLNEFERYVIEEKGTERPFSGEYYLHNAQGVYCCRKCDAPLYLSEHKFHAHCGWPAFD CCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCEEECCCCEEEECCCCCCC DEIPGAVARHTDADGHRVEIVCASCGGHLGHVFEGEYLTEKNLRHCVNSVSMVFKSHEEM CCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH EQGQKTISEAGPTANAFATFGAGCFWCVEAIFLALKGVVSVKPGYAGGPAADANYKRVCD HHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCC GDTGHAEVVHIEYKPDEVSFETLIEVFFQSHDPTTLNRQGNDVGTQYRSVIFAHNEPQAE CCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEECCCCHHH AAAKAIEALTKSGAFDNPIVTEVVAFDEFYPAEDYHHDYFARNGEQRYCALVVKPKVDKF HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEEEECCCHHHH KKAFASLLK HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]